RNA id: TU82530


Basic Information

Item Value
RNA id TU82530
length 3199
RNA type TUCP
GC content 0.48
exon number 3
gene id G66008
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34784212 ~ 34787474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAGGTAaacaagtgtattttatttgtattttctttactgGCAAATATAAAGTACTGCTccacattttcacagaaaaaatgctttattttttattttttgttgtcgttCGTTTCTTCATCCCTTCTCCACTCCCAACTCTAAAGATCAATCAGTGCACAAAAACGTCCACATCCATGAACAACCTCCTCCGACCCGTCTCAGGGAGAGCGTCGGCTGTGACAGGGGGGTGACATGAAGACTGtttcccctgtgtgtgtgtggggggaggggggggagggtgtGAAATGAAGGGAGAACTGAAAAAGGCACAAACACCAGCAACAGGAACAccaacactaataataataataattacaggaTTGAGGGGATGACTGGGAACTTTTGGAAAGGTTCTTGTTGGATTTGGATTTAAGGCTATTCtcttgtatatatatatatatttgttgacTACAAACATTTGTGCGATTGCATTTGAATTAGATGTCTGTGTCTTAAGATCCACACCTGCGGTTGTGCAGATGAAGCACCAGGGACTGTGCAGACGCTTCTTTCACACgaacaggaacaggaagtgCAAGTAACCACAGAGTCGCATCCAGCCAGGAGTCTCACCTGACCGGCCTTCTGCTGTTGTGCCAGCAGGAGGAACCCTGGCGGGGCTGGTATCATATCACTGTAAACCAGTTAAAACACTGGGGGCTGTGAGGGGAAGAGGGATCACGACAGGAACCATAAATGACAACAAAACTGAACGTAACAACCACACAAATGAACGCACCAGGGCAGGGGCAACGCTTGTGAGCGAGGTCTCAGCAAGTGGACTTTTTTTGCACCCTTacgataaaacaaaaatgaacagaaaatccAATGCAACTTTCACAAATTGGCTGCTTTAACGAAATGAGCCAACCACAGCGCACCTCAGCCCAGCCCTGCCACCCCACCCCTACTGCCCCTCCACACCCAGTGGCCCGGCGGCTCGCTCTGATGACAGGGGCCCTGGAGTTGAAAGGCTGGGAGATGTCCTCGGTGGACAGCACAGCCCACCGAGGAGCGACACTCCCTGGAGTGCAAAATCGCTGGTCTGGACCCACAAGTCCAGACCCGGAGGACAAAACAagacaggaagagaaagaaaggaagagggGAAGAAGTAAGCGTACCGACAGAAGCATGTGACAGGGGACTGTGCCTGCAGGGGGGAGGCAGCTGTCTTTCTTCCATAGACTTTCCACAGGGAGGGAATTAAAGACGcgattggaaaaataattatagattCCGTCTTCAGGTAAAGAAGACATTGTGGCACAAGAAAGGGTGTTTTCATAGCAAAACAGATAGAAATCTCCTTCAGGAATTACCAGCAActaagataaatatatttaactctAGGAACAACTTTACCCGTCTAAAAAACTATGCCAATACGGCCCgccgagacacacacacacacacagtgaaatcttttgttttaaagctgtagataaataataacactgaacTATTTATTccacacacatttacagagCTCAAAAAACAACAGCGATTCAAGCAGTAACTAACTAtaatcttaaatattttttgtagtattttttagatcatatataatttttttatatatatatatatataatttttatatatatatatatatatatatatatatattttcttaaattatttacataaaaattgCTACATTTTGCTGAAATAAAATTTCGTATTAAATAGCGGACACAGTGGCACATCGCAGTGCACCGCAAGGAGCAGGGCCACACCACCGACAAGCAGGGGCCACGCCTAGGAGCAGGGGCCAGGAGGCGTGGGCCCCGCTCGTAAGGGCTTCCGTTTCACTAATGGAATGTGGTTTTGCTGCAGGTTAGGTTGGGTTAGTTTTCCCTTTTCATTCCCCCTTATTCACATTACTAGTTACCTTAATTGCACCAAGTAATGAAAACTAAGATGTACGCCAGCCATGAAGAAGCACACAAACCCCAGGGACTGTaatcagagagagaggtgtggaGGCAGTAGAAGAGCAAACCCCCaccccacaaaaacaaaaacaaaaaacccgtCCCCCCCTTCACAATCTCATGCTGCACATTGTTCTTTAGGTTTCAATAACATTAGGCTTttcaattcatatatatatatatatattttcttccgtaataaaactttaaaatggcAGGCGTTGGTCTAATGTAAGAAATGGACTTAAGATGAAGAAAACccataaccttttttttttttttttcttgttttaaaccCCCAACAGTCCTAGAAAGGAAGGAATCCACAGTCAAACCTGTCACCTGACTGACTGATGCGCTAGCAGACCCCACTGCTCCGCTCCGCTCACACCCTGTTGTAATAACTGTAGGGCCAACAACGATACTAACACACACCACCCCCCCCGTCACTTTGTAACGGACCCTCGGAGACGTGGTGCGTTTCTGttgcacaaaaatgtaaaaacaaaaacaaaacaagcaaacaatccCCCAAGATCTGGAGAGACAAACTCTTAAGTGCAAATGTCTTCAGTCGACCATAGTGTGAGGAGGGCATCACCCTGCCCCTCCCTGGGACCGCAACCCCCTAGTGCTCGCTTGGTGGAACAGAGGAGGAGTGGGGGGCGGGGAAGGTGTGGCTGCAGGCCACTGGATCTAACCAGCCTAGAGTGGGCAAGGCcaagagaggggaagagggtAGCAGGGGGCTCGATGACATCCCTGCCGAAGCCTTGAATCTGATTGGACCGGGCAGAGTGGAGTGGGCGGGGCCCGGTCACAGCAGAGCAAGTCCGAGAGTGGGATTGGACCAGATGTGGGGGGGAGGGCGGGACAGGACGGGACAGGTCGAAGCAGGTCCGACTCGGGAGTCTCAGAGGAGCCCGTGGATCTGAAACGGGGAGTCGGTGCGGGGTCAGGTTTGACTATCTGATTGGACCGGACAAGGTGGCGGGCTTGGGCGGGCATATCGCTTTCTTATAGGCTGCAGCCCAGGGCCTTGGCGTGGGCGGCAGACAGCTGCTGCACTTTGAGTCTGCGAAGGCTGGCACTGGAGTAGCCCTCGTCGCTGCAGCTGCTGCGCAGGCTGCCCCGTTCGTCCGAGTCACTGACGCTGCTGTTGCTCCACTCCAGATCCCCCATCAGGTAGTCTGTGCCCTCCACGTCCACGTCAATCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82516 lncRNA upstream 34061 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 34869 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 36098 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 51833 34676911 ~ 34732379 (+) True G65978
TU82472 lncRNA upstream 257137 34526867 ~ 34527075 (+) True G65962
TU82612 lncRNA downstream 237529 35025003 ~ 35026229 (+) True G66072
TU82704 lncRNA downstream 360740 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 379594 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 645794 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 765429 35552903 ~ 35553230 (+) True G66258
AMCG00020826 mRNA upstream 282010 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 290822 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 308567 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 327311 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 332485 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020835 mRNA downstream 63188 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 91216 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 94017 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 132344 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 147541 34935015 ~ 34936792 (+) True AMCG00020843
TU82376 other upstream 372592 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 724747 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 824530 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1675786 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1794767 32946731 ~ 32989445 (+) True G65691
TU82596 other downstream 180370 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 376339 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 959751 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1079919 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1467225 36254699 ~ 36256511 (+) True G66506

Expression Profile