RNA id: TU82596


Basic Information

Item Value
RNA id TU82596
length 5451
RNA type TUCP
GC content 0.48
exon number 2
gene id G66060
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34967844 ~ 35008322 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcagcagcagcggcacACGATTGGTTTAAATTGCCCGGCTACGCCATTGCGATTGGCTGGGCTGATCTTCGGTCTCCCTGACAGTCAGTCCCCGCCCCCTCTCCCCCCAATCCGATCCGTCTCAGAGTCTGTGTGGGGACTgcatccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatacatTTTGGTGAAGGAACAGCAAAGACTGACTAAATTGACGTTGACTGAGAGAATAGTCTGTGAGTTGCACACATCGGATGAACAGGAACAGTTCTTAGAAATGCCTGATCCTCCTGGCAGAGGCAGCTGCTAGTGTCTGGGCTAACGATACTCATACTGCTGCACTCAGGGTCACATGGGGGCCTCGGTGACGGACTCCTGGGGTCTGGAGCACCCAGAAGTCCTCACTCTGTAGTCCTCCAATGTTCCTACTCCCTACTGCATGTGGCTGCTATACTACACTGTGCCACACTCTGCTATACTAACCCCAgtcatatattatacattttacagggCAGCGCCACTCTGAACCCgccacagcacagcactccTATATTACTGTGTACATCTATTATTCATCTCTGTGCCATCCTAACCCCTTACTGCTCCACATTGACACCCTTGACCTCccacctctgacctctgacatCTCACCACATCCCCTCCGCTGTAGCACCCGGCACTCCTGCACACCTTTTAAAGCCCAGCTCTGCCCCCTGGCACATCACGAACACCCCTAACCCCCCTCATCCGCAGTGCCCAGTGCCATGCTGTGCCGGTGGGCTCCGAAGCAGCCTTCCCTGTTCCATCTGGACCGCTGGGTGCCTCCTGTCCTCTGCTGACACTCCccacaaaacactgcattctccATCGAAACTCATATTACCCATAGTGCACTGCTCCAAGCTGTACTAACATCCCCTGCTACCACTGATCCTAAGTAATGCAGTATAGTGCCGTACACAGGCCTTGGTTCCTATGATTCAAATCCAGACACTCTGCAGCAATGAGGTGTGCCATCATCACTAGTATTGTTCttgttattatgattagtattattactattatgattattggTTTGTCTGTTAGTGCCACCTAACAGCCGTCGAGAGTAGGAGTGCATGATGTCAGCCTGCGTGAATGTGCATTTCTGAGACGCCAAACGCAAGTCACTGTGGGTAAAGGACTGGAGCACTGACGCAGGGTGCGGACTCGTGCCGCAGTTTGTGAATGCTGGACTGCGCTGGGCCGGGTTTCAGGGATGTGTGCAGAGAAGGGTTGATTCGGTGTAAGATTTGCTACAGGCAGGAAAGAGGACGTTGGCAACAAGGTGGTGGGTGACGAAAGTTGTGGTGTGGTGGCAGcttctgttgtttattttgggaGCCATTTggtggtttagtttttttgaggGTTTTTTGTGTACCGCCCCTGGGCCTCGGACTGACGTTGTTGCGTTGCATTATGGTGCTCGTCTCTTGTTTGCTTCTACAGTGGAGAGACTCACTTTTGCGAAGACCCCCGAAACGTCTCGCTCTCTTCCTGGGTTTCTCTCCCAGGGACTCCCAGAGATCACCGCGTTGGAGAAACTGGAGGGGCGGCAGCAGTGCGGCTCCCTTTCATACACGGGCCAGGAACTGAAGCATATCAATCATTTCCTGTCTGCTGTATTGGAAGCAGTCGGGGGGGTAGAGAGATTTTAACATGGAGAATTAGCTGTACGTGAGAAGATCGTTGGCTCTTGGACGGTTTTTGATTTCTTACGTTTGTGTTGAGTGAGGAACCTGCAACTTCTCtttctttaaacattattattattgttatgaatatttttacttttttatttggtgTGGGGGGTTCAGAAATGGGTGTATTTGAATGTTATTAGTTATagtatgatgattattattattttgaataattattattatgaatatgacTGGTGTAAGGCTATGATTGTAACAGACGGGGTGCAGATGACAGGTGGGGGGATCATACCCAGTATTTGGAGCCGGACCCCCAGCCTGTGTCAATAGGGAGGCAGGGAGCCGTGTGTCTGCCATGTGGGGGGAGAGTGGTAGACATGGGGAACAGATCATCACTCgcataaaacacaaaagccaAGCACAAAACGTagcaggcacaaacacagcaggtGGCAGTTACAGCCGGTGTTGctgttgcttttgcttttggtgtgtattgttttgtgtgtggggtCTGCAGCAGTGCGGTGTAATCATGAGCGGTGCAAGGACAATGGCAAGGCAGCGCAGTGaggtgtagtacagtacagtacagtacagcacagtgcagtgtagggCAGTGCAGAAGGCTTCAGTGTCCAATCCAAAAAAATCAGTGCTGGACAGAGTCAAAACAACAGACTGTATTGcaaaactgatttgtttttctattgtaCACTGAGGTGCGACTGTGTGCGATTGTGTCTAAACTCATCCACAGTCTAGTCCACACAGTACCTCAGAAGGTCGGTGCTGCCCGGCGCGTTGTGACAGGGCTGGCCTGGACACGGAGCCCGCTGGGTCTTTGTGAACTGACTGAGGCTGtctgatgatttatttattctttgtaaGGCTTTTAACAGCTGGATGAATtcgttttgtatttattttattttattgtattaaaaatcaatataatcaTGTGCTTGCTTTTCCTCTGTGTCGCCCATGAGAGCATCTTTGAAAGCTCTGTGAGGGGCGTTAAGGGGAGCAGCCCTGAGGGGCGTCGGCACAGCAGTCACTGTAGCACAGAGACTGCAGGCTCCTCTGTGAACACAGCCGCGTGGGAGACTGGTCACGCCTGCACCCAGCTGCGCAGAGAGAACAGCACACTTCCGAGGAAGAGGGGTccagtggagagaaagaaacaattatatgctgtttttttttgttttttttttttttttttattcgcTTTCTTTTTCCGCCTGCAATATTTTACAGGACACTTGATTTCTTATTGAGCTTCGGCCCGGCAGACTGACCGGTGTCCCCCGCCCCCACACGTCCACCGCTCAGGGCAGATTCGCACAGAGCCCCTACAGGCTGATGTATCACTGACACTAGCAGGCAGGCAGAGGCTCCGAATTCCCACGCCAGCCTCGTTAGACTCCTCGAGGGGCGCCCTGTGAATATGGTACATTAGCTGGCCATGCACGAGGCTGACCCCCCCCTCTGTCGTACAGCCCCAGCTTTCACAGGACCCTCCCACCTGTACATGCTACCAACTCCTGCCACTGTCCTCGCCCCCGATGAACTCCACTTCCGTTTCACtatggttttatatatttttttttcctgtcctgttttattttgtttcgttttttgtATAAGAAATGGGATTGACAGATTCTGTCCGCACCAGAACACACTAGCAAGGGTCACCAAATTGAGGGCAGAAATGATGGCAAGCGCGCAGTCGGGTTCAGTTGAGTTTCTCGGCTGTTTCTCGCCTTGCTGGGAGCGCCTTCTTCCCCTGCGCTGGGAAAGCGAGAGGCGAAAACCACAGACGTGCACCCGAAAAAACAATGTCTGTAATGCTGACAGAGGAGTATATGTGGACTGCAGGTGCGGATTATATGTTATCGCGGCCGAGAATTTTTATTGGCAGGAAGTGGCGCGTGTGTGATTTGTGAAGGGCGCGTTGCTGGCATTTCAGTAGGCATCCGTAGAGATCCGTGCTCTGGGCTGTGTTTGTAGTTTGGGCAATCAGTTCATTTCCACTGCAGCATCTCCGCTCTCGAGTTCCAAAGCTGTATCCCACCTCGGAAAGAGGGGCAAGGATCGCCAGGCACGGCCTCCACCCGTTTCTCACACTGTCTTGTCTCTtgccctctttctttctttctttctctctctctctctctctctctctctgctcttccGTGCCAAAGCCAAGATAATGTTACAGGCAACTTCTTacgaaaaagaaaggaaaataatattgaattaacTACCTAAGAAAAATAGAGAGCAGACATGATAAATAAgtgatttgaattaaaaaaacgtaGCGCAAAAgcgaaacaaaattaaatcaccCGGAATCTCACGGATAACGCGcctcgtttatttatttatttttcatataggtgattacatttttccattgtattattttgcttcGTTCAATAAAGACATTATCTTCTCACTGGCgttggtgtgtttgtgtaaaaggATGTATTCAAAAAGCCGTATTTCAGGAAACTAAGTAGACAATCAGTGGACATACCCAGCTTGAGATATTTAGATAGCTTGTTAACAATGGTGTTTCTGTGCTCTGACCGTTAGCAAATGAAAGGAGAGAACAAGAGCCTATTCCTGTCAGATTTCAgtactttttcatttcagaCTCTGCAccgttttgttttctgttcaaaaCTTGCACTGGATGATTccatttgtaatattaaaactatttatatatagacaAACACAGGCGAACACTGGCCTTTTAGGAGTGAATTGTTTTGCTCCGAGTCCAACAGTGTAGCACATCGGAGGGGGGCGGGGCCTAATGTGTGGCACTGCCAGGCAGGAGCCCGGTTTCGGGAAGCAGAGCAGATCCCAGATGGGGTTAGTTCTCACCCACAGGAGGGAAGACGCCTGCAGTCCCAGCCGTTCAGAAGCTGCAAGGTCACCTGGGTACAGATCGACCTCCCTGGAGGGGTGAGCCTCATTGTACACCCTTAAGTTATGACTCATCTTGTACAGATCCCAGTATTACATCACCCCCTCCACCGATCTGATCAGTGAACTATAGTGAACCCCCACATTCAACCAATCTCTAAATCAATAATGGCACCCCTTGTAGCACCAAATGAAAACCAGCGTGCCAACGGAATTGCACCAGCCTGCACGTCACAGCTTCCCCAAACATGGCAACTCTTTGCAGTTGGTGTCATATAGGCACTGTGAGGAGGCAAACTTGCTCCAACGTCTCCTTTTGATAAGGACAATCAGTAATTTCATTAAGTTTAGCTGTGTTATTAAGATCTTTGTTGTATCCTGTGTTTTGTGACATGCATGTTTGTGGGCATCGCCATTATTGTTGAATTAAAGGGGGGGAGGCCACCATGGCATGGTATTTAAAGGGGTGGGGAAGGGCAAGTTTATCTATGGGGGTATATTGATGAACAGTGGAATcggttatttattgttttggggAATTTTATGGAAAACACAAAGTTAAGTTTAggttgactttattttattgttaattttacttaatatttttttgttttgtactgatttTTGGTTTCCTGCTTGAACACTGCCccattttgaaataaactttttttgcACTGCTCCTTTGTCTCGCTCCCCCATCGAGAAACTGGGAGTGCTTCTTTACAGGCACCCATAGAAATAAAGTGCACAGTATGCTGTAAGTGTGGTAAAACTTGCATATTCCATTTAG

Function

GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82516 lncRNA upstream 217693 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 218501 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 219730 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 235465 34676911 ~ 34732379 (+) True G65978
TU82472 lncRNA upstream 440769 34526867 ~ 34527075 (+) True G65962
TU82612 lncRNA downstream 16681 35025003 ~ 35026229 (+) True G66072
TU82704 lncRNA downstream 139892 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 158746 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 424946 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 544581 35552903 ~ 35553230 (+) True G66258
AMCG00020841 mRNA upstream 1359 34964622 ~ 34966485 (+) True AMCG00020841
AMCG00020843 mRNA upstream 31052 34935015 ~ 34936792 (+) True AMCG00020843
AMCG00020844 mRNA upstream 40214 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020842 mRNA upstream 74851 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020840 mRNA upstream 88039 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020847 mRNA downstream 47822 35056144 ~ 35076420 (+) True AMCG00020847
AMCG00020848 mRNA downstream 69079 35077401 ~ 35082383 (+) True AMCG00020848
AMCG00020850 mRNA downstream 104837 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020858 mRNA downstream 137755 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020855 mRNA downstream 139281 35147603 ~ 35148487 (+) False AMCG00020855
TU82530 other upstream 180370 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 556224 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 908379 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 1008162 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1859418 33107873 ~ 33108426 (+) True G65705
TU82706 other downstream 155491 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 738903 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 859071 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1246377 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1906493 36914815 ~ 36917436 (+) True G66551

Expression Profile