RNA id: TU82706



Basic Information


Item Value
RNA id TU82706
length 805
RNA type TUCP
GC content 0.45
exon number 2
gene id G66149
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35163813 ~ 35164985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTTTaacaattccattttttttgtataaaacacTGTTGAACCCCTAGCCAATCAACAAATTTGCGTCCACAAcatgacaatacatttttttcccctgtccatcaaacaaaaatctaaaagaacgtacaaatgttttatatagtattttttttccttttgcagtttttttttcttcttcttgttttgtattattacaactcaaaaaaaaaccaaaacaaacaaacaaaaaaaacctaacaaTCGTTCCTTGAACTTGAACtacggtttaaaaaaaataaaaaaaaaataaatgggaaaaggAATAATCTTGCAGCCCGTCCCCGCTCTGCGCCCGTCCCTGTAACAGCGCAGCGAGAGGGCCGCCCCCTTCACCCGCTCCTCTATGCAGTCTTCTGTTGCCCCTTCTTCCCAATGAGGGATTTGTGAATGTGAGGAATGACACCTCCCCAGCAATGGTGGCCTTGATGAGTGAGTCGAGCTCCTCGTCTCCACGGATGGCGAGCTGCAAGTGGCGAGGGGTGATGCGCTTCACCTTCAGGTCTTTGGAGGCATTTCCTGCCAACTCCAAcacctacagacacacacagctccgTCAGCACCGAGCACAGAGGATCCACCCAGGACTGGCACAGCCCAGAGTCCATGAACCACCTCATAAAAATTTCTACAGACACTTTACTCTGCCCAGCCCTCCCTACTATGGGAACACTGTGGAGAAGAGCTCGCTGCCTTCCGTCTGTTCAAAACAAATCTCTGCGATGTCTCGTCTGTGGGACAGCCAAGGACACGTACTGCTTTCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82704 lncRNA upstream 14395 35148214 ~ 35149418 (+) True AMCG00020855
TU82612 lncRNA upstream 137584 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 413662 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 414470 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 415699 34746893 ~ 34748114 (+) True G65994
TU82709 lncRNA downstream 2083 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 268283 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 387918 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 551060 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 593123 35758108 ~ 35761032 (+) True G66319
AMCG00020856 mRNA upstream 2717 35158674 ~ 35161096 (+) True AMCG00020856
AMCG00020855 mRNA upstream 15326 35147603 ~ 35148487 (+) False AMCG00020855
AMCG00020858 mRNA upstream 16271 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020850 mRNA upstream 43652 35113159 ~ 35120161 (+) True AMCG00020850
AMCG00020848 mRNA upstream 81430 35077401 ~ 35082383 (+) True AMCG00020848
AMCG00020857 mRNA downstream 6067 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020859 mRNA downstream 8041 35173026 ~ 35175613 (+) True AMCG00020859
AMCG00020864 mRNA downstream 112875 35277860 ~ 35287818 (+) True AMCG00020864
AMCG00020863 mRNA downstream 189721 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020868 mRNA downstream 211285 35376270 ~ 35401524 (+) True AMCG00020868
TU82596 other upstream 155491 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 376339 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 752193 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1104348 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 1204131 33954806 ~ 33959682 (+) False AMCG00020796
TU82915 other downstream 582240 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 702408 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1089714 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1749830 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 5156128 40321113 ~ 40321821 (+) True G67108

Expression Profile