RNA id: TU82978



Basic Information


Item Value
RNA id TU82978
length 301
RNA type TUCP
GC content 0.60
exon number 2
gene id G66362
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35867393 ~ 35908402 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTTCGCAGCATGAACGTCGGCAGCCATGTCCTTGCCCTCTCCCTGCAGCCGGTCTTTTTCCTCACAGTCCTCCGAGTCCCCAATGTTGAAGGAGACGCCTCGCTCCTCCCGAACAGGGTGGGAGCTCAGCAAGGTGGCCATGTGGTCAGGCAGGGAGCTCCTGCTCTCAGACATCCCCACGCTGGGCAGACACTCGATGGGCTCCTCGGGGACAGCCTTGAGAATGGGGCAGTGCATGTCGCTGTTCTTCTTGTCCATCAGGGGTCTCTCGGAGGGGCTGGACTTGATggaaaagaagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82953 lncRNA upstream 10365 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 49614 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 98822 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 106361 35758108 ~ 35761032 (+) True G66319
TU82891 lncRNA upstream 151144 35716045 ~ 35716249 (+) True G66290
TU83019 lncRNA downstream 96217 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 816492 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 897918 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 1165277 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1380112 37288514 ~ 37288841 (+) True G66696
AMCG00020884 mRNA upstream 7698 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020883 mRNA upstream 40320 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020874 mRNA upstream 116947 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020875 mRNA upstream 130404 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020872 mRNA upstream 450548 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020891 mRNA downstream 950 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020893 mRNA downstream 22220 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020892 mRNA downstream 29040 35937442 ~ 35950175 (+) True AMCG00020892
AMCG00020890 mRNA downstream 50227 35958629 ~ 35986692 (+) True AMCG00020890
AMCG00020895 mRNA downstream 113235 36021637 ~ 36029074 (+) True AMCG00020895
TU82915 other upstream 117039 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 702408 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 859071 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1079919 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 1455773 34404534 ~ 34411620 (+) True AMCG00020820
TU83151 other downstream 346297 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1006413 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4412711 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5143070 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5689821 41598223 ~ 41602113 (+) True G67323

Expression Profile