RNA id: AMCG00021085


Basic Information

Item Value
RNA id AMCG00021085
length 5473
RNA type mRNA
GC content 0.46
exon number 25
gene id AMCG00021085
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2522860 ~ 2576954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTCGAGATCCCCGAAGATTCAAACCAGATGTGCCCCGCGTCCCTCAGCGGTTACTCCCTGGCCGTGCAGAAGTTCTCCCAGACCCTGCAGTGCTTCCAGTTTGACTTCATCGGAGACTCTCTGACTGACGACGAGATGAATATTGCCGAGTCTTTCCGTGAGTTTGCTGGTCTGCTGCAGGAGGTGGAAGATGAACGGATGATGCTGGTGCAAAACGCCTGCGACTTGCTGATCAAGCCTTTGGAAAAATTCCGCAAGGAGCAAATCGGAGTCACAAAGACATTACAGAACGGGTCTGACCAGTTTGCTGCCGCGgagaggaagaagaagtTTGAGAAGGAAAGTGAGAAATACTACTCACAACTGGAGAAACATTTAAACTTGTCATCGAAGAAAAAGGAGTCCCAACTTCAAGATGCAGATGGACAGCTTGACAAGGAGAGGCTCAACTTCTACGAGTCGTCGGTGGAGTATGTGTATCAGATTCAGCAGGTGCAGGACAGGAAGAAGTTCGACGTTGTGGAGCCGGTGCTGGCCTTCCTTCACAGCTTATTTACCTTGAATAACCTCACGTTCGAAATGACTCAGGACTTCATGCCCTACAAACAAGAACTGCAGCTGAGCTTGCAAAACCTGAACATCGTCAACGTTTCTGTCTTCCAGACCAGGAACCACTTTGAGAGCACCAGGGAAGAGATGGAGGAGCTCATGAAGAGGATGAAGGACTCGCACCAGCTGTGCAAAATCTCCAACCAGTCGACCATCGAAGGGTATCTCTATTGCCAGGAGAAATGGGCTCTGGGAGTTTCTTGGGTGAAGTACTACTGCAGATATCAAATAGACAGCAAGGTGTTGATCATGATCCCCGTGGAGCAGAAACCCGCCGCCAAGCAGGGCATCACAGAGTTAAAACTCAAATCCTGTATCCGGCGGAAGTCAGAATCTATAGACAAGAGGTTCTGTTTTGATATTGAATGCCAAGAAAGACTGGGGACTGTGACCCTGCAGGCTCCGTCAGAGTCCAACAGGAAGATGTGGATGGAGGCCATGGACGGCAAGGAACCTGTAATGGAGTTGAATGAAGTCGGGTTCAAGTTCGTCCGGAAGTGCATCAATTACGTTGAGACTAAAGGACTCACACAAGAAGGTGTTTACCGAACTGTGGGCAGTAACATTCAAGTGCAAAAGCTTTTAAATGCCTTCTTTGATCCCAAATGTCCAGGTGATGTGGATTTCCTTAGCAGCGACTGGGACATAAAAACGATCACCAGTTCAATGAAATTCTACCTCAGACTGGGTGCCATTCATTCACTGGTCTACAAACTCCCGGAGAAGAACCGCGAGATGCTGAACCTGCTGATCCGACACCTAGTCAACGTCTGCAGCCACAGCGCGGACAACCTGATGACTCCCTCCAACATGGGCGTGATCTTCGGGCCGACGCTGATGAGGGCGGAGGAGGATACGGTGGCCGCGATGCTCAACATCAAGTTCCAGAACATCGTGGTGGAGATTCTCATCGAGGACTGTCAGAAGATCTTCAGCGCCGCCCCCGAGGAAACCAACGCCCCTCCGATCCCCCCGCCCCGAGTGAACCCGAGGAAACGTCAGCCGATCACCATCTCCAAacgccccccccgcccccggcCGATGCTCAACAACTGCCAGTTTGAAAGCGCTGACGACGACTACAGCAGCAGCGCTCAAAATGGCAGCAAGTCCGATGCTATTTCAGATGGCAGTTCCTCAGCCAGCCCGGTTCCCCTCCAGCGGACCAAATTAGCCAACTGCGCCCCCCGGATCAGCGCCAGGGAGCCGGGGCAGAAACAGGCCCTCATGCCCCAGCAGTCCACCCGGCCTGAGAGGCACTCAGACTCAGACGTGGGCAAACTGGTGGCCAGGCTTCATGATGGTGGGCAGAAAGCAGACAACCCGGGAGCCAATGGAGAGACTGGCGTCGGCGTGACCAGAGCCCTCTCGTTCCCGAACCGGAAACCAGCCCCGCGCACCCCAGCTTCTGCTAGAGAGGGGGATGGAGACAATGTGGGCAAAGTGAGATCGCCGATGGAGAAGCCTGTGATCACCAGGCCCCCCATGCGGCCCCCGGACCCCCCGGTCAGGTTCCCGGCACCCCTGAAACCCCCCGTGCCCCCAGTGGCCGAGGAAAGCACCGCGTCCTACGTCGCTTCCAAAGCCAAGTTTTTCGAGAACGCCTCGAGGCAAACCGGAAGAGCCGAGTTGGAACCCAAACCAGACGACACTGGGAACGCCAGTGCCAGGGTTGAGGTGGACCTTCATGTGATCCTGAGGAGAAGCGCTCAACCTGCCGAGCTCATCTCCGGCACCGTCGAGTCTCAGTGCGAGAGAAGAGCCTTCAAAGTGACGACCCTcagacaggtttccatctcctcACATTCCCTGGACTGGAGCTGAGGACAATCCTTCTTTGAGAGGCACTAGGATATGGGTCAGGCTTGGGATCAACGGACGCGAATCACACCCTGAATGTGTCGCCCAATGTCGAGCTGACGTGATGCTAAAAGGAaaagggacttttttttttcatatttttggtTGTACATGTTTGCGTTCAAATCATTTAATCTGTGATGCTGAACATGCCTTATTGTCTTCTCATGGATTCCAGTGGATCCAGTTGGGTCTACCAATGAATGTGCCAGAGAAACCTTAATATGCTATTGGTGTGTTTTCAAGCCAAGGTGCCGTCTGAGCAGAAAGTGTTGTGTATAGGCCATGACTTTTTGGGGTCATTTGGGGTGTTTCAGGTGGCATTTTCTCAAATCACTGGTTTTCTGGATGAACTCCTCTGAGGTAgcactttttcccccactacAGTAAATAATTTAACTAACGCAATGGTATCAAATTTTGAGattttacagttgtttttaaactgtaggCTTCTGTTCACCGCATTTGGTTTGAAACAGATTTGATGGCAAACAGAATTAAAGAGAGTTTGCCTTCATCCACCTTCAGATTAACATGTTGCTTCTTGGACACAACTGACACAACGACACATGAAGACTTCTTTAAAGTCCCTCTACGAAGTTACCTGATATGGGTGGAAATTATAATGCACAACTATATTCTGCACATTGACTAAATGcttagaattaaaataaactgtaaatgtgaGTTTTGGTTGCGGACACTTTTGAAAACCAAAAGGCACAGAAAAGCATCAGTTACAAACTGAGCAGGGCGTTCAGGATTTAAGATTTCGAAGATTCATTTTCATAGCTCTTCTCTTTCCCTAAAATCAGTGCAATCCATCTTTTTGAAAACtgactgtttttgttcttgtttttctcttaagTAACTTGTCTTTATCTGTATACATTTACTGTCTGCAGTTATTGTCCCTCTCACTGGATTTGCCACTgttacatatacaattatattattattattattatgattatcattcTGTGGACTTTCAATATTTCTTCCTAAGTCAACAATGAGAATATTGAATGTGAACAAACTCAACCAATTCCCTGAcgttcaaataaatgtttctttctgtgAGAACTACTTCATCTGTAGCCGAAGAAAGAAAAATTGCATTTGAGTTGAACTAGAGGTAAAcggtttatttatatttttgtatatatatatatatatatatatatatataaaaaacagtgACATTGCCATGAAtcccagatattttatttagatgtaAAGCCAATTTCAACTCCATTGGGTCTCTTCTGCACACACAGTGTCTGCAGTGCAGTCTGGCTGTCTGTGTTGCTGTCCTGCACTCGATTCCTCTTCCCACTCGGCACAAACATGCTTAGAGCTAAATTGATTTTCTGGGAACATCGTTCCCCTTCATCTCCTGGACCAGATATCTTTTCTGATTGTCTTAATTAGTGTTTTTCCAACTTCGTTCTGTGCTGTTATTGAATTTTGTCTCTCTGAAATGACGGACTGCATTTCCAATGTACCTAACCAAAAAGAAAGTAagcattttctttataaaaataaaataaaaccacctgTTTTTCCTAATATGATATATAAGCAGGATCACATGAACGAACGTACTGGGAAGGCGCTGATAACAATGTCATTGCAGGATAACGACGGAATCACCAACAGTGAAAACACTTGCTTAGCCCTTTCCATCTAATTCGGCTGTAATCTGTAGGTAACAACGTAATCTCTGGGTAATTACAAAGATTTAATCGCATAGTTATGCATCAAATCACGCTTTGAATTCCACAGAGCAGCTCCGCTCAGTTTCAATCCGAAAGAAGAAAAGATCCTTCCCCCTCGCTGCCCTTCTTGGcttcctctctctcaattcGTAATAAAGATAGGATGCAACTCTTCTCCGAGGACCAGGAGATTAATCGTAAACCAATAAAAAGATATCTATAGTCATTGGAATAGTCTGGAATGGTATTATTTCATTACCGATTATAAAGGCTTGTcacaaattattacaaataactgCAGCTGGCAATAAAGCAATCCTTAAACAACCAAAGcattaaacaaatctgtatttttaatgttttactcgGGAGGACATAAAGCATTTCTAGACTGTGCCGTAATGCTTCACCGGCAGCCATTTTCCCAGCCGAAATGTGCGACTAGCAGGGAAACGAACGGCTGGAGCAGAAAGCACAACTTCTGTGCCGAACAGGTGACCGGAAAGGTGGCTGGGGAGTAATGCCCCTGTAAGAGCTGTCCAATTATGCTTTTTAATGATCAACAAGCATATGAATGTGAAATACGCTGGAGAAGAGGGCAGGGAGCAGAACGGTCACTGACACGAGAAAATGACAGCGGTTTTGATGCGTGTCCTTCGAGTTGATCGTCCTTCAGGTGCGTGTCTCCCCTCGTATTACACCCGACCCAAAGGAAAGGTGCCATGGAAACCTTTTCATGCTTTAAGCGGTGACATTTACAGCTTCTCCCGTCTGGCAAATTAATTTGaagtttgggggggggggggggggggggcgcaaTATAAAGTTAAAATTACTTTAGATTAAATGAATCCCAGAGGATCAGAGATGATAATTAAAGCTTGTACATTGTTATTAAAGAAAtgctttagttttttccttcacCAAGTTTcagaatttcacatttcaaagcagttATTGTGATTTAAAGCTCTCTGTGTTGTGTACATATTCTCCCaacttttcttttgtattatttttgtatttttacgtGGGGGGCTTTCGCCTGTAAAGCCTGCGATCTGAGAAACTGGAAGACCTTTTCAGGGTCCTGCCGATCAAACGTCTGCATGCTTTGTGTGATCTTTCCTCCATAGAGAATCCTCTCGCTCGAGTCTGCAGTCTGGTGTACCTTTGTAAAATCTGTCTGTTGACACATGAATGTTTGTGGAATTGTGTGTAGATGTACTGAACAGTCTAGTGTTCATTTGGAAGTATTAAAAAcgcctttctctctc

Function

GO: NA

KEGG:

id description
K20650 OPHN1, ARHGAP41; oligophrenin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104124 lncRNA downstream 5734 2515490 ~ 2517126 (-) True G83442
TU104123 lncRNA downstream 11311 2511324 ~ 2511549 (-) True G83441
TU104102 lncRNA downstream 168166 2353987 ~ 2354694 (-) True G83422
TU104034 lncRNA downstream 331951 2190626 ~ 2190909 (-) True G83371
TU104012 lncRNA downstream 375743 2144404 ~ 2147117 (-) True G83355
TU104158 lncRNA upstream 23555 2600509 ~ 2602840 (-) True G83465
TU104174 lncRNA upstream 113016 2689970 ~ 2690210 (-) True G83481
TU104192 lncRNA upstream 364629 2941583 ~ 2954613 (-) True G83499
TU104207 lncRNA upstream 459343 3036297 ~ 3056152 (-) True G83512
TU104212 lncRNA upstream 510740 3087694 ~ 3087955 (-) True G83517
AMCG00021082 mRNA downstream 110526 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021077 mRNA downstream 277169 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021078 mRNA downstream 346326 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021075 mRNA downstream 415974 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021072 mRNA downstream 465475 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021086 mRNA upstream 6376 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021090 mRNA upstream 100631 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021091 mRNA upstream 678425 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021092 mRNA upstream 711040 3287994 ~ 3288740 (-) True AMCG00021092
AMCG00021105 mRNA upstream 1156802 3733756 ~ 3736353 (-) True AMCG00021105
TU104110 other downstream 63481 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 544892 1973160 ~ 1977968 (-) True G83313
TU104173 other upstream 104606 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2171827 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 3967538 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 9950139 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 10142910 12719864 ~ 12801586 (-) True AMCG00021259

Expression Profile