RNA id: AMCG00021732


Basic Information

Item Value
RNA id AMCG00021732
length 3474
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00021732
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27054043 ~ 27064071 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATCTGTGACAGAAAATCATTGATGACAACACAGGATATTGGAAAGGTGAGCTTTGCAGATCTTTCAGTTTTATGGAAGGGTGAAAATGCATAAAGCGTCCTCTGAGCCAATCAAATGAGCCTGGAgtagagaaggagagagaataGTCAGCCGTAGATTAGATATTCACAAGTATAAGCTGCTGTATAGGAACCAAAATCGGCTCTGAAGTGCCCAGAATCCAATCATAAATACAGTGGAAGACCTTTCTTCAAACCATCACTTTTTCTCAACTTTTGTCTGCTGCACATATGAAATCAATGGCATCCCTGCGGGTGCTTTGGCCAGGCTTCCTTCTGTGTCAAATTCTGGACATGTCCAATGGAGCGCCATCCTCCAGAGACGAGGTTTTTGGGAAGGTCGTGGGCATGGTGTCACCTGGAGCAGCCTTCCTCAGTGAGAATGCTGTTCACTCCTTTTTGAATATGTTGGAGAAACGTGTGCAATGTCTCGATGTGTCGTGTGGAAAGtgtCTCTCTCCTGAGAGTTTGTCTCAGCTCTCCAGCAGTTTCCCGGTAGACAGTGTTCGCAGTGAAGACTTTTTCGCGGTCGCGGCTGGATTGTGTTTCTACCTGAGCAGTCCTCTCGAAGCCTGTCTTGCTGTGAAGGAAAGCAGGTGGCAGAGGGAGACAAACGCTTTTGTTGAGCGTGTCAAAGACATCGAAGGAGAGGGCCTCAGCCACGTGGTAGATCACTTGCTCGACAAAATTCAAAGGCATTACCTAGCAACAGGCAGAGATCAGCCTTGTCTCACAGGAAGTCACATTCTTGAAGAAAGCAACATTTCCTCAAGTGATGAATTCACACAGAGCATTGACGTTGTCTTCGGCAACATCATTTACCATGTGCTCAGAGGGGATTGTATGAGTGTGCGAGTTCTGCCAGCAGGAGAATATTTTCTGGATTATATTTTTGATCATGTTCAGAATGGATCTGATAACATGTCATTAGAAGGTTTAGCACATATCATGCTTCATCTGGATTTGGGAAGCATCAAGGATCATGAGGCAGAGCATGACCACAAGCAGCACAGCCAAAGACACGGACAAGAGCATCATACCAATAACGGGGACTCGAGGTGTTTCTCTGCCCAGGAGATGTTGGAGGTTTATCATTTTAACAGCAGCTCTGGACTGTCACGGGCCCAGTTCACAGAGCTAAGTCCAGCACTCATCCAACAGCTACTCAGCAAAGCATGTGTACAGACTCCTAGCCAGCCAGAAACCATCCAACAACTCACCACCACGGAGCTGTATGTTTATGCATCTGTTGCAAACCTGGTGATCTGCCTGTTCGCACCACTTGGGATTGTGATAATGCTGTGCAGCTCCTGCAGTGGCGTCTTTCAGTACATCATTCAGTTCTGCATCAGCCTGGCCGTGGGCTCGCTCAGCGGGGACGCCATTCTGCATCTCCTGCCACAGtttCTCGGTCTCCATGTGCACTCGACTGAGCCCCATGGATCTGGAGAAAGCATGGATTACATCTGGAAGCTGTTGGTGCTCCTGGTGGGAATCTACGTGTTCTTCCTGATGGAGACCATTTTCTCCATCATAATGCACCCACATCCACATCAGAATGAGTCAGAGGATACCCACCACTGTGACCATGGTACAGTTTTGCAGATCTACCAGGAGGGACAAAAGAGCAGCCAGTCCGCCTCACAGGCTGACCTGGTTAAACAAGAGGAGGCTGATAAATCCTTTCCTGTCTCTGAGTGTTTGACCAGAGAGCAGCGCATGCTTCCCTACATGATCACAATAGGCGACGGGATCCATAACTTCGCGGATGGCCTGGCTGTGGGAGCTGCCTTTTCAATCTCGTGGAATTCAGGGCTGGCCACCTCACTAGCGGTGCTCTGTCACGAGATCCCTCATGAACTTGGTGATTTTGCGGTTCTACTACATTCTGGAATCACAGTGAAGAACGCTGTCCTGTTGAACTTGGGCAGTGCTCTGACATCCTTCATTGGTCTCTACATCGCCCTCTCGGTATCCACCAATCAGATAGCCAAGGAATGGATCTCTGCAATTACAGCTGGCTTATTTCTATATGTGGCTCTAGTGGACATGCTCCCTTCCATGACGCATGTGAAAAGTAACAGGccgttgttattttttttccttcataattTGGGGCTTCTGGTTGGCTGGGCAATATTACTGCTCCTCTCTTTGTATGAAGATGATATTGGTTTCTAAAGCTGGGCTCCAGCAAGATGAAAGATTTCACAAATATTCAAGAATTATACTAAAGTTGTATCAGAGTTCAGTGTGAAAtgtcaattttttttgtatttctttctttatggcAGATATTAAGTCACACAGTGGTTGTATAGATTAAGTCAAAAGGCTAATGCATAatgcttttctgtcttttagACATTGTCAGTTAAAGTGCTTTTGGGGAAATAAAGTTTCTGATGACAAAATGAAGGTCCTCAGATTAAAAACAGATGTGCAATATacttaaaaatctatttttctaATGAAATCTTTTACTTTTGAGAGTTGTTTTCCTTGTATAAAGTGCtgtattttggcatttgtttaaatatacattattttttaaggaaaaagAAAGGGCAGGCCaagatgaataaaatatttattttacaaagtaaCCTTTCTATTTATAATGATGAGCAACTTGAGTGCATGAATTATCCATTATAGTTCACTGGTTTTCCTTGCCTGTGTCTTTCCAAAGATAATGTTATCATGTTCCCAGATGGCACATGCTTTAGTGTGTGCAAGGCAGGGGAATATATGAGCCAAACATCTATTAAAGGTCCTGTAAAGATAAAACTGCATCAAAGGTGAATGAATAAACCCACAAGCACTGACTAGGCAACATTATTTATCTCCAGAATGTTCAGCTGCAACAGTTGTCAACCCAGAAGTCTTCTGCACAAGCTGCTCTGTGTTTACTCCAGTTAGTTTATGCTGTTTTCCACAAGGAAGGCCGTCTTCATTTGTAACAACATTTGTGAcatgaaaacaattattaagacttgtggcattttaaaattatatgagCTCTGTATTAAGTCCAGGTTGTAGGGTCATTAAGTCTTTAGTTGATTAGTCAAAGTTCAAAATATCCGAAGTAATCTTGATCCAAGACCAATTAATACTATTGTGTATCTTTCAAAGGTTTGGTAAGCATAATACTTGTAATACAGATTCTGGTAAAGTATTGTAGACATGCTAGTTACTGATTtgtgcaacaaaaataaaaatgttttattattttgcctttgttttttattcataattgaCTTGATGGTAAGGTGTTGATGGTAAGAACTTAATCCGTGACCattaatttcacaataaaacataggTCATGGGTACTATGAAGATTAGTTCTGAATCTTTCatgaatcataaaatatatgaaatgggGCAACAAACGGGTCAAATGGAA

Function

GO: NA

KEGG:

id description
K14710 SLC39A4, ZIP4; solute carrier family 39 (zinc transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109835 lncRNA downstream 158707 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA downstream 158707 26892476 ~ 26895336 (-) False G87992
TU109817 lncRNA downstream 253328 26798091 ~ 26800715 (-) True G87980
TU109775 lncRNA downstream 352927 26674078 ~ 26701116 (-) False AMCG00021719
TU109689 lncRNA downstream 616150 26432144 ~ 26437893 (-) True G87884
TU109958 lncRNA upstream 345352 27409423 ~ 27409711 (-) True G88095
TU110025 lncRNA upstream 555749 27619820 ~ 27620091 (-) True G88153
TU110026 lncRNA upstream 563049 27627120 ~ 27631668 (-) True G88154
TU110029 lncRNA upstream 570833 27634904 ~ 27636720 (-) True G88157
TU110070 lncRNA upstream 1039259 28103330 ~ 28103666 (-) True G88190
AMCG00021731 mRNA downstream 44139 27004481 ~ 27009904 (-) True AMCG00021731
AMCG00021725 mRNA downstream 107353 26946172 ~ 26946690 (-) True AMCG00021725
AMCG00021723 mRNA downstream 134223 26899963 ~ 26919820 (-) True AMCG00021723
AMCG00021724 mRNA downstream 229745 26805040 ~ 26824298 (-) True AMCG00021724
AMCG00021719 mRNA downstream 335535 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021736 mRNA upstream 132021 27196092 ~ 27202305 (-) True AMCG00021736
AMCG00021735 mRNA upstream 172503 27236574 ~ 27261351 (-) True AMCG00021735
AMCG00021738 mRNA upstream 223181 27287252 ~ 27291996 (-) True AMCG00021738
AMCG00021743 mRNA upstream 352199 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021744 mRNA upstream 520349 27584420 ~ 27587139 (-) True AMCG00021744
TU109843 other downstream 134199 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 899668 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 957259 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 1146038 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1647505 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 1717731 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2005130 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 2666006 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3273512 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 3813777 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile