RNA id: TU104110


Basic Information

Item Value
RNA id TU104110
length 2379
RNA type TUCP
GC content 0.56
exon number 1
gene id G83428
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2457001 ~ 2459379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACGTCTGGGTAAGGGACCTCCATCCAGTCGCCCGTTTCATTTTTCACCCAGGGGGCGGAGGTGTAGGGCCCCCTGCCCAGGAGTCCCCCTGTGGACCACGGGTCTGGAGAGTGCCCGTCCTGGGGCCCCAGCCCACAGCCTCTCCCGTACCCGAATGGGTGGCAGACAAAGGGACCGGCGCCGCACTGCTCGGGGTGCTGAGGGGGCATGTACGGTCTATTGGGTGGGTAAGGCCCGGTGCCATTGTCGCTGTACCTGTACTGGACAGCCCAGAGCCCGCGGTCTAGGGTTTCTCCTTCGGTCTTTATCCTGACACCATACTCAGGGGGGTAGTCGGCATTCTTACCTTCTGCGTTGCCCTCTGGTCCAGTGGGAACAGCAGCGGGTTTGTACAAGGCATGGGACGGGACGTGACTCTGCTCCACAGACAAGGGCTCGCTTTGACCATAGGCAGTGGGGTTCTGTGGCACCGATTGGTCAAACTGGCAGCAGCCCGAGTGTCCCCCATCCATATTCATGTGATGTTCAGACTCCTCGCCAGTTGTGTTATTCAATTCGTTATCCAGCCTTGATTCTTGTCCCCCCCCTTTGGCATGTGTGGCACTGTGGAGCTGCAGAGGGACCACCTCACTGGCGTGCGCTCCCTTGTACATGTCACCATCCTCCCCACTCTGCATGGATCTCCCCTCCTGTGCAATGGGGTATTTGTAAAGTGCCATGGGGTCACCTGCCCCAGCTGCAGAGCACTCCAGCAAGGGCACATCAAACAGGCAGTTCCCTTGACTCCCGTCACTGGCCAGAGATGACCCCTGGTTAGGTCCCGGGTCATTCATCTCATTAGAGTCAATGGCCAAGCCCAGTGAGACAGACACCGCTTTGCAGAGCTCCCGGGCAGTCTCCGAGATGGTTGTGCAGGCGGACTCGATGCCACTGCTCTCTACATAGGCGTCACTGGTGTGACTTTTCGCCTGCTTTCTCTGGTGGGGCGTAACAGGTCGGCACGATTTGTGTTCCGTGTTGCAGTCGCGCAAACCGTGGAGAAACGCACCATAAGCGCCCTCCTCCACATCATCTGGCTCGACCACAGCCGAGAACTCGCTCCTGCCGGCCAGCAATCCCTTTGCAAAATGACCGACTCTGGCAAAAGGATCGGGCTGTCTGGAAGAGCCGGCACTCTGGACGTCTTTCGCCTCGGCGCCACAGCTGTGTGAGGTCCCAAAGCACAGTCCTCTGTACGGCAACTGCCGATGAGTTTGGCGCATCTCCCAGGGGTGCTGCTCCTCCAAACACCTGTACCTTGAGCTTGGCAGCTCCAGGCTATCGCAGGCGGTGCTGTTGCTCTGGAGCACACTTCGCACGCTGTGGAAAACGTTTTGGAAAGGTCCATGAAAAACCCTGTTTGGGGAATCACACAGTCCTCCTAATCCTAACCCAAGCGGGCTCTCCATAGTCCACAGTCAGCGCTGCTCCGGCACGGCGATAGGCTGGGAAAGCTTGAGGATATGGATGCAATTTAACACGTTTCCAAAGGcagaataattcaaaataacGTTATATAAAAGCATTGATCATttgcagtgttaaaaaaaaatacttagaGACCAATAGCGCATTGTGACTCAGAATAGTCACAGAGTCAAACAGGCAGCGTGAGCTAAAAGCAAAAGGAAATGTAACAGTCACAACTGCTACATTGATTCAGTCAGCAGTAACATAACAAGTGCGTATTACctattacaattacatacagGCCAGTGAGGCATGCAAAACTCCGGTGAAAAAGGTGCCCAAGTTGCAGCTACATTCAGTTAAAATGAGGCAGAAAACAGAAAGCGATCCGGCTGCTGTGGAGACTCCCAGTCACAGTGAAGAGCCAGTGAGAGCCAAGGGCTGATCACACCGCCAGGGTCCAAGAGGACAGCACCGAAATCAGCCCTGTGAAGGAGCTCCGCCTGACAGTCGTATACTTAGTCCCCTTTTCCCCCGAGAAGGTCGGATGACAACATGGATCTGTCCAGGGCAAAATGCTGCCGTTAAATTGGGTTTCTTCTGAGTTGAGGCTAGTCAGCACAAACGGCAGACATGTCCACATACACCGAGCCTGTGGGCACAATCAGGCGCGGACTGGGACCGAAAAAGCGGACCCAGTAAAGTGCggtcggtgtgtgtgtgggggggtggggtgttgGCGATGTGCGGTCCGCGTGTCAACACACCGAACCAAAGAATGGACCGGCGTCGCGTCTGGATCCCTGTGCTCGGAGGCTCGCTGGGTCAGTGCGGGTTTGAATGCAATTCTGCCTGTTTGGCTGCAATTTGCGCAAAGCTATCGTGCCGTCTTTCCGAAGGGCTCTGTGCGTCTTCTCGCCCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104102 lncRNA downstream 102307 2353987 ~ 2354694 (-) True G83422
TU104034 lncRNA downstream 266092 2190626 ~ 2190909 (-) True G83371
TU104012 lncRNA downstream 309884 2144404 ~ 2147117 (-) True G83355
TU104009 lncRNA downstream 315258 2140290 ~ 2141743 (-) True G83352
TU104000 lncRNA downstream 350603 2105064 ~ 2106398 (-) True G83346
TU104123 lncRNA upstream 51945 2511324 ~ 2511549 (-) True G83441
TU104124 lncRNA upstream 56111 2515490 ~ 2517126 (-) True G83442
TU104158 lncRNA upstream 141130 2600509 ~ 2602840 (-) True G83465
TU104174 lncRNA upstream 230591 2689970 ~ 2690210 (-) True G83481
TU104192 lncRNA upstream 482204 2941583 ~ 2954613 (-) True G83499
AMCG00021082 mRNA downstream 44667 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021077 mRNA downstream 211310 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021078 mRNA downstream 280467 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021075 mRNA downstream 350115 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021072 mRNA downstream 399616 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021085 mRNA upstream 63481 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021086 mRNA upstream 123951 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021090 mRNA upstream 218206 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021091 mRNA upstream 796000 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021092 mRNA upstream 828615 3287994 ~ 3288740 (-) True AMCG00021092
TU103965 other downstream 479033 1973160 ~ 1977968 (-) True G83313
TU104173 other upstream 222181 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2289402 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4085113 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10067714 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 10260485 12719864 ~ 12801586 (-) True AMCG00021259

Expression Profile