RNA id: TU104311


Basic Information

Item Value
RNA id TU104311
length 531
lncRNA type intronic
GC content 0.34
exon number 1
gene id G83602
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3734677 ~ 3735207 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcatcgcgcggaggggcatggtgtTTGTAAgagactatgtcaatctggaggtccatcagaggggcaaggaggaagcctataagaactggcgtatacaagatctgggggagctcaggatcccatgatgggacccacctccggggacggtcagttccccctgctggagcccgagtccaagatcttttaaagattttaaggatgattgtttttaaaaaaagattttaaaaaacgaatcttaattgtttttaaagatttagtaacttttaaatcacattgtttagGGATTTTGgtatagttttgttatattttgttgtcaaatacattgaccgttttgggtttaatttaaaatgcattagaccttttttgtttgttttttattttttcctttttaattgttttttttattttgtttaatgcattttcagttattttcaatgtatttgacccttttgttggtgtgcagtttttgcttttatcacgtttgttttgttgatttgagcacgtttattttaaagttaattgttttagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104305 lncRNA downstream 16487 3710153 ~ 3718190 (-) True G83596
TU104238 lncRNA downstream 312231 3422202 ~ 3422446 (-) True G83539
TU104212 lncRNA downstream 646722 3087694 ~ 3087955 (-) True G83517
TU104207 lncRNA downstream 678525 3036297 ~ 3056152 (-) True G83512
TU104192 lncRNA downstream 780064 2941583 ~ 2954613 (-) True G83499
TU104319 lncRNA upstream 11951 3747158 ~ 3747512 (-) True G83607
TU104320 lncRNA upstream 13451 3748658 ~ 3750902 (-) True G83608
TU104383 lncRNA upstream 386042 4121249 ~ 4121486 (-) True G83667
TU104389 lncRNA upstream 390284 4125491 ~ 4125701 (-) True G83673
TU104504 lncRNA upstream 968048 4703255 ~ 4751235 (-) True G83761
AMCG00021092 mRNA downstream 445937 3287994 ~ 3288740 (-) True AMCG00021092
AMCG00021091 mRNA downstream 469466 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021090 mRNA downstream 1015758 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021086 mRNA downstream 1151060 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021085 mRNA downstream 1157723 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021110 mRNA upstream 44614 3779821 ~ 3801007 (-) True AMCG00021110
AMCG00021111 mRNA upstream 75204 3810411 ~ 3813043 (-) True AMCG00021111
AMCG00021109 mRNA upstream 81486 3816693 ~ 3825283 (-) True AMCG00021109
AMCG00021115 mRNA upstream 501830 4237037 ~ 4260026 (-) True AMCG00021115
AMCG00021116 mRNA upstream 526822 4262029 ~ 4281357 (-) True AMCG00021116
TU104173 other downstream 1052915 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 1275298 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 1756709 1973160 ~ 1977968 (-) True G83313
TU104502 other upstream 1013574 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 2809285 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 8791886 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 8984657 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 9892128 13627335 ~ 13627747 (-) True G84952

Expression Profile