RNA id: TU104319


Basic Information

Item Value
RNA id TU104319
length 355
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G83607
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3747158 ~ 3747512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACTCATATATTGTTGACTTTATAATAAATTCAATACTTTGACCTCTAATCGCAGAGCGCGACTCAGACCAGGGTGTGTCCATCAGCACAACACTCGACACAGACACAGTTTCTATTGGACTCAGCTCTTACTGTTGTTTAGTTGTTCCGTCAGTCTAAAACACTGAAACCCTGGACAAACACGGACGTGTGCACATCCACACAAACCTCATGGCCCCAAGTCTCCCTTTGTCCATGAACAGCTCGGCCTTCACGGCGCCGTCTGTGGGATACAGGCGGGCGTAGAGCTTCCGGCCTCCCACCTTCTCTCTGAACCAGCTGATCGCTTCCGACGTCCACTGCCCTCCGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104311 lncRNA downstream 11951 3734677 ~ 3735207 (-) True G83602
TU104313 lncRNA downstream 11951 3734991 ~ 3735207 (-) False G83602
TU104305 lncRNA downstream 28968 3710153 ~ 3718190 (-) True G83596
TU104238 lncRNA downstream 324712 3422202 ~ 3422446 (-) True G83539
TU104212 lncRNA downstream 659203 3087694 ~ 3087955 (-) True G83517
TU104320 lncRNA upstream 1146 3748658 ~ 3750902 (-) True G83608
TU104383 lncRNA upstream 373737 4121249 ~ 4121486 (-) True G83667
TU104389 lncRNA upstream 377979 4125491 ~ 4125701 (-) True G83673
TU104504 lncRNA upstream 955743 4703255 ~ 4751235 (-) True G83761
TU104507 lncRNA upstream 991584 4739096 ~ 4739884 (-) True G83764
AMCG00021105 mRNA downstream 10805 3733756 ~ 3736353 (-) True AMCG00021105
AMCG00021092 mRNA downstream 458418 3287994 ~ 3288740 (-) True AMCG00021092
AMCG00021091 mRNA downstream 481947 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021090 mRNA downstream 1028239 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021086 mRNA downstream 1163541 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021110 mRNA upstream 32309 3779821 ~ 3801007 (-) True AMCG00021110
AMCG00021111 mRNA upstream 62899 3810411 ~ 3813043 (-) True AMCG00021111
AMCG00021109 mRNA upstream 69181 3816693 ~ 3825283 (-) True AMCG00021109
AMCG00021115 mRNA upstream 489525 4237037 ~ 4260026 (-) True AMCG00021115
AMCG00021116 mRNA upstream 514517 4262029 ~ 4281357 (-) True AMCG00021116
TU104173 other downstream 1065396 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 1287779 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 1769190 1973160 ~ 1977968 (-) True G83313
TU104502 other upstream 1001269 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 2796980 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 8779581 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 8972352 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 9879823 13627335 ~ 13627747 (-) True G84952

Expression Profile