RNA id: TU104623


Basic Information

Item Value
RNA id TU104623
length 1530
RNA type TUCP
GC content 0.40
exon number 2
gene id G83864
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6544492 ~ 6546577 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcTGCTATGCATTTTGGTTATGAAATATCTAATGGACATATTTCTTCAATTGCAACACACAAAAGGggtttgtaattatttaaataagaaaacctAATGATCCAGGAAACAATATTTGGGAAATCTACTATGCTTGTTGTGAATTACTTCACTGCTATGGACGGGACATACAGACAGAACTTGTAGACCTTGTGCGTTTCAATCAATCTGTTACGTAGATGATAACAATGATTGGCTTAATTAGTCAAGACCAACATCTTTGTCCACCACCTGAACTGAAGACACCTAAGCAAATAATGACAGGCTGGGGACCTCCAGAAGATGCACTTTTGGAGACTGTTGCATACACTGTAtccatttagtttatttgttgCTTTCAAAAGTcaagaataaacacaatttCTTGCTACTTATAGGGCTAATTTCACACTCAGATTTAGCACTATTATTGGACACCCCAGTGTTATTTAGGCAGATTAGTCTGTGGAACCAGCTGACAGTGTTTAAAGAGACGTGAGGTTTCACACTCGTGTAAGTCATCGGAATGAATGTGTACAACTGCAAACAACCTGCACGTCAAGCTGTGAGAATACAAAGCAGCCTTTTAGTCAAGgtttaaacttaatttattacatCAGTTATGACATTCTGCCACAAGAAGTGGCACAATCTGACAGCACAAGAAGATAGTATGTGTTCATCCACCAAGTAGTACAGTTCAAACTATTTTAGTTAACTTTTAAAGTGAAAAGCCTTGGTTTCTTCACTCCTGTCTCCATTCTTTGGGGGTGACCTTCCCAACGGGCGACAGATTCCATGTAATGCCGGTCTGTGTTGCTACCTGTaacaataaaaatcaaatcaataatgtGTACCATGTCACAAAGTAGTCACCTAACTAGAACTTAAAACTGCCCCTCCATACACTTACTTACAAAGGCTTTAGGATGTTTcatgcacatattttaattggttttccaATATTCAGAAATATAGAATTTCATGCAAAGACCGAAGTAAGAACTTTACTAATTAGTAATTGAAATATCttgcaaagtaaatgtattagtCACTAAAGTGGTTTGAGAGGAAGACAACATTCAGAATTGAGATTTGCAACTGAGAAGTGATTCACATGATGTTGTATCTGGTTTCCAATCCCTCATTCCCCATCCTTCCTCAGATGTATGAACAGTGAGGGTGTTTCCTGGTTTAGGACAGTCCGAGGCTTTGCAGAGACTTACAAAGGACCAGACTGCGCCGCAGAACAGCATCCCGGACACCATCAGGATGTTGCCATACTTGTCATGGAAGTCGGGCCCGGCTTTGTGATGGGTCTGTCGGACCGCAGCCTGGCGGACACCCCGGGGCTAAGGTTCAATGCAGTCTTTGCAAAACGGAACATGTTCGGATCTTGTTGTATCTTCACCGCAACCTCCCTCTCGCTGCACCAAATAcccttgaaagaaaaaaataaatcaagatggCTGCTTACACCGGAAGAAAtcgcaaaaaaatatatattaaaa

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104616 lncRNA downstream 13219 6530936 ~ 6531273 (-) True G83860
TU104586 lncRNA downstream 279921 6264336 ~ 6264571 (-) True G83839
TU104580 lncRNA downstream 568711 5975474 ~ 5975781 (-) True G83833
TU104518 lncRNA downstream 1685263 4822058 ~ 4859229 (-) True G83773
TU104504 lncRNA downstream 1793257 4703255 ~ 4751235 (-) True G83761
TU104619 lncRNA upstream 22602 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA upstream 32277 6578854 ~ 6580419 (-) True G83878
TU104676 lncRNA upstream 96645 6643222 ~ 6643523 (-) True G83901
TU104708 lncRNA upstream 265655 6812232 ~ 6813434 (-) True G83931
TU104820 lncRNA upstream 571496 7118073 ~ 7122449 (-) False AMCG00021153
AMCG00021135 mRNA downstream 2190 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021136 mRNA downstream 94320 6449423 ~ 6450172 (-) True AMCG00021136
AMCG00021134 mRNA downstream 122754 6397628 ~ 6421738 (-) True AMCG00021134
AMCG00021125 mRNA downstream 1807278 4728373 ~ 4737214 (-) True AMCG00021125
AMCG00021122 mRNA downstream 2078834 4463840 ~ 4465658 (-) True AMCG00021122
AMCG00021141 mRNA upstream 112960 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021145 mRNA upstream 269358 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021154 mRNA upstream 505959 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021152 mRNA upstream 532601 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021155 mRNA upstream 541424 7088001 ~ 7101704 (-) True AMCG00021155
TU104502 other downstream 1793257 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 3862730 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4085113 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 4566524 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5980516 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 6173287 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 7080758 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 7323362 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 7503397 14049974 ~ 14051897 (-) True G85115

Expression Profile