RNA id: TU109596


Basic Information

Item Value
RNA id TU109596
length 2562
RNA type TUCP
GC content 0.40
exon number 1
gene id G87806
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25905444 ~ 25908005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaggaaataactctacctaaaatcacgccccccaattatgacgtaggaatatcAATAAGGCTaggtcatacgtcataacaaaataggctgcgcccataggaccctactatctactcaCACATAGACTGGAAAAggccagttgggactacagaagcagaaatagaaatggttgagatggtaaatgactgctttctaacacaatttgtcagggaaccaaccagggagagcgcatgcattgacttgatagtttcaaatgaccaagatagagtcagagggacactagttagataaccaatggcaaactgtgatcacaatatggttagctttgagtcattatttcaaaaaacaagtctaaaacaatggtctacagttttagaaaagcaaaccttgaaggtatgaggcagcacttagaagaggaaGACTGGAGCACaatggatacagattcagttgaaaatggatggttatattttaataaatttgtaccaaaactttgaggaccaaaaaacattggccaaaatgctttaatagaagtatacaaaaaaaatcaagagaaataaaatgttgtattgtgcatacaaaagggatagagatgaaacaagaTACaaagaactgcaaagagatcttaagaaagggatcaggaaagtaaagagggaaatgaaaagaaacatagctcttgggagattaaactaatgcaaagagcttcttccaatactacaacagcaataggtcaataaaggaggaagtgaaacagataaagagcAAACATTGAAGTaattggaaaacgaacaagatgtggcaaatgttctaaattagtatttcacaaaGGTTTTtacgaaagaaaaaaaagataacatgccacaggttaacaatcaatccagtcaaaccctaagagagatcagcataaatgaggaggagatattaaagggactagcagaataaaaaacaaacaaatcacctgagccagatggtatatttccaagagtacttaaagaaattagggaaattatttataggccgctaactcaaatattccaaatgacacttagaacaggggatgtgccaactgactggaagatggcaaatgtcataaatcaaatctgtatttttttttgttggcttTGGTAGCTTGCCCCTAATAAACTGtccttcctttcatttttattaggGCAAGGCCGTGTTTTCTACAAACTCACCCTGTGTGGAATCCACATAGACTGTCAACAGCTGAGTGGCTTATCTGAATGCTATGAGGTaatgattttcaaaagaaatCACAAAGTGTTTAGGCAGATTGTACATTGTACTGTACTTCAtgcaatacataaatcaataaaatggcaataacccataaattacaaaatataaaaaggcaaatgtaagcaaattacttcaattaagggttcgataaagtaattgagagctgggctgcaaaaactaaaaaacagcagggtagggggtcctccgtaaccagggttgagaaccactgagaTAGTGTGACACCTTCAAATAATACTGTCACTTTCTTAGAAAAGCAATGCCAGTGCTGTTCTCATTCCCCTTGCATTCACAAGTGATGGAAATGCTGGGAAAGAGAGTGGCTTCCAGACTCAACATTAATTGGTTTGATTATCTGGATGTTTCGTCAAGGCACCTGATCAATCAGTGGCCCAGGTATCAGAACGTGGATGAAGAGGTGTCACCTGTATGATAAACGGGACCGAATTCATCATGGACAGTAAGTCACAATTTCTCAGGGACCAAAAAAATGGTTAATATTTTCTGTTAGGAATCACTAATTATAATGGCCAATTACAATTATGATATATTGTGACACTTCTACAGGCCCAGGAGCGACAACGTTTGTACAACAGGGGAGCCCATGTTATTCCCAACCAACTTCTAAATTGCTGGCAAAGTGGCAGGTACCCTTTGTGGTCACATGCCTCTTAGGTGAGGTCGATTATGAGGTGTGTTGACCGGACCGTCGGAGAGAAAAGTAGATATACCATCTcaacatgctgaagaagtggcAAGAGGAGGAAGCATTATGTGCCTCTAGTTCCTCCCAAATTAAGCAGCCTGAATCCGCTGTTTCTGAGGTTTGCATTGACCCCAATTTAACAAATGCGCAGAAACCGCAAGTTCGCTCTTTATTTACCAGCTTCCATCATGTATTTTCTCACCAACCCAGGCTCACACCTCTCATCGAGCACTATATTCACAAAGCACTGGACACCTGTGTGCGTATAAAACCCAATCGCACCCCCTATTATAGAAAGCAGGCTGTTAATGCAGAAGTGCAAAAGATGTTGGAGCTGGGAGTTGTAGAAAAATCACAGTCGGAGTGGTGTAGCCCTATAGTCTTAGTGCCAAAGCCTGACGGCAGCACCAGATTCTGTGTTGATTATAGGGAGCTCAACGCAGTGTCTAGGTTTGATGCCTATCCGATGCCCCGTGTGGAGGAGTTACTGGACCGGCTGGGCGCTGCTCACTTTTTTACGACACTGGACTTAAACCAAGGGATACTGGCAGATCCCCCTCAGTCCACTCCTCATGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 7403 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 7403 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 7403 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 19467 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 96240 25803340 ~ 25809204 (-) True G87767
TU109687 lncRNA upstream 486946 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 510675 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 524139 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 766073 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 890086 26798091 ~ 26800715 (-) True G87980
AMCG00021695 mRNA downstream 21212 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 105780 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 191678 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 200616 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 493882 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021699 mRNA upstream 54909 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 117393 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 175773 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 183222 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021710 mRNA upstream 532650 26440655 ~ 26472215 (-) True AMCG00021710
TU109433 other downstream 498906 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2566960 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2744467 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4821874 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 5180564 20721884 ~ 20724880 (-) True AMCG00021534
TU109647 other upstream 183249 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 244100 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1003469 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2873797 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 3161196 29069201 ~ 29071760 (-) True G88288

Expression Profile