RNA id: TU110131


Basic Information

Item Value
RNA id TU110131
length 368
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G88241
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28779343 ~ 28779710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAACGTGACCCAAATGTGTTCGTTAATGGTACTTTGTAGGCGTAACAGATCTTAGAAACCATATAATCAGACCCTCAAGTTGCGGTTACACAGGGTGTAATAATACCATTGTCGTCTTCCTCGTCACCCTCTTCCTTTAGTCCTATTATGCAGATGTGCTTCTTAATTTGCCGCTTGTTGCAGAACTTGCGATTGCACTTCTTGCACTCCAAGGTGCTGCTGTCTTCAGACTCCACCTCCTCCACCGTCTCAGGCTGAGCTTCTTGTCTCTGCTTCGTGCTCGTCTCCAAGAGCTCCCCCTCAGCATAGAACTTCTTGGTAGACCCTTTGGGCCGGCCCCGTTTTCTCTTAACGGTGCATCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110130 lncRNA downstream 658 28778293 ~ 28778685 (-) True G88240
TU110118 lncRNA downstream 17371 28761196 ~ 28761972 (-) True G88228
TU110116 lncRNA downstream 81233 28697878 ~ 28698110 (-) True G88226
TU110088 lncRNA downstream 511790 28266712 ~ 28267553 (-) True G88201
TU110071 lncRNA downstream 646480 28132566 ~ 28132863 (-) True G88191
TU110133 lncRNA upstream 5456 28785166 ~ 28785661 (-) True G88243
TU110134 lncRNA upstream 32053 28811763 ~ 28811965 (-) True G88244
TU110135 lncRNA upstream 50448 28830158 ~ 28831224 (-) True G88245
TU110254 lncRNA upstream 499651 29279361 ~ 29280873 (-) True G88347
TU110362 lncRNA upstream 1058808 29838518 ~ 29841539 (-) True G88434
AMCG00021757 mRNA downstream 187541 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021756 mRNA downstream 540203 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021755 mRNA downstream 560628 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021747 mRNA downstream 1138434 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 1192204 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021767 mRNA upstream 263788 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 482742 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021770 mRNA upstream 488704 29268414 ~ 29271589 (-) True AMCG00021770
AMCG00021774 mRNA upstream 493382 29273092 ~ 29275349 (-) True AMCG00021774
AMCG00021773 mRNA upstream 501846 29281556 ~ 29285963 (-) True AMCG00021773
TU109843 other downstream 1859499 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 2624968 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2682559 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2871338 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 3372805 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 2092 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 289491 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 950367 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 1557873 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2098138 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile