RNA id: TU102851



Basic Information


Item Value
RNA id TU102851
length 643
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G69539
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12199934 ~ 12200597 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCAGGCTTTCACACACCTGGCATACTGCGCCATGTTGGCTTGCCAACAAAACTGCACCGACTATGTGTCTCCATATCGACTGGTGGTCCAAATGCTCAAATTAAAAGCTTTGTGAGATTTATTTTGAGGTTCATTGTACAAAATTCATATATGAGAAATGGTTGTGTGtgcaagtggtaactaaattttttgtacattttagttgGATTATAGCTGTAAaattttaaaatatttccccTTTGAGCCTGTCAAAAGGAAGAAAACCGTTACACCTTTTTCATGGGTTTGAAATGTACAACAAAAATATGGCAATGGACAGAAAAAAGTAggtatgaaaaaaattaaagcaggaaaggaatgaaagaaacaagaaaaaaacacaatgtggTAAAAGGGAATTACTTGGAGGGGGGGATGGAcgagggtaaaaaaaaaagagttgtcTAAATGTGATATACCTGTGTGCTCATATTTGTGTCTTAGGAGGGAACTGGTCTTCTGGAATGTTTTGTCGCACAAGTCACACGCGTACATACCACTTTCAGTCTTCTTAATCTTCTTCCGGGCGAGCAGCGACTCGCTGTCTGTCAGGTCCTCTAGCCCTGACAGATAGTCCCCTGCGCTGTCCAGTAGCTCCCCCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102823 lncRNA upstream 190012 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA upstream 190012 12005701 ~ 12009922 (+) False G69518
TU102824 lncRNA upstream 190012 12005701 ~ 12009922 (+) True G69518
TU102766 lncRNA upstream 776617 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA upstream 776617 11420205 ~ 11423317 (+) False G69483
TU102902 lncRNA downstream 121654 12322251 ~ 12322532 (+) True G69578
TU102962 lncRNA downstream 244911 12445508 ~ 12451348 (+) True epc2
TU102960 lncRNA downstream 246732 12447329 ~ 12452365 (+) False epc2
TU102968 lncRNA downstream 256667 12457264 ~ 12457498 (+) True G69625
TU103009 lncRNA downstream 317692 12518289 ~ 12526873 (+) False G69659
XM_043248390.1 mRNA upstream 43961 12122231 ~ 12155973 (+) True LOC122351360
XM_043249531.1 mRNA upstream 113426 12046474 ~ 12086508 (+) True arhgap15
XM_043249494.1 mRNA upstream 709785 11465604 ~ 11490149 (+) True LOC122352020
XM_043249225.1 mRNA upstream 813940 11382392 ~ 11385994 (+) True nepro
XM_043249308.1 mRNA upstream 817982 11379870 ~ 11381952 (+) True tex30
XM_043248569.1 mRNA downstream 191689 12392286 ~ 12429356 (+) True acvr2aa
XM_043248560.1 mRNA downstream 234391 12434988 ~ 12445737 (+) False epc2
XM_043248559.1 mRNA downstream 234393 12434990 ~ 12445737 (+) False epc2
XM_043248152.1 mRNA downstream 252529 12453126 ~ 12456128 (+) True med4
XM_043248153.1 mRNA downstream 252529 12453126 ~ 12456128 (+) False med4
TU102836 other upstream 44130 12046499 ~ 12155804 (+) True G69527
TU102754 other upstream 709938 11483437 ~ 11489996 (+) False LOC122352020
XR_006251850.1 other upstream 1804704 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 2643287 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 3050268 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
TU103038 other downstream 426938 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 530239 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 532036 12732633 ~ 12741060 (+) False LOC122351618
TU103123 other downstream 571491 12772088 ~ 12773109 (+) False LOC122351618
TU103124 other downstream 571827 12772424 ~ 12773109 (+) False LOC122351618

Expression Profile