RNA id: TU103577


Basic Information

Item Value
RNA id TU103577
length 682
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G70027
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13674718 ~ 13675514 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttcaGTGAACTATCAAACATTTCCATGGATTCAATTAATGTGCCTGGCTCCAGTTCCCCCAGTGGAAATGGGTAATCTGTGCCTAACATCACTCTATCCTGCAAGAAATAGAATCTTTTGTTAAAAGTAAAGCAGTAAAATTGAAATAGCAACTATTATCAGAGGTGTATATTGCTGCAcagcttttatttcaaatacaaagGTCCTAGATGTGAAAATCCTAGCTTTGCCATTTCAAGAGTTAGAGTTCATCTAGCTTTCTGTAAGGTGCTAACTAAATATTATTGTGTCTCTTATATTACAAGTATTTTGTATTACActtgtattacaaatataagATTTTGTATTACTCTTGATGTTAGAATTGAAATTCCAAAAACTACCTTTCCTATGACATCCGTGAGTAACTTCAGTGAAAGTGGGTCATGCACTAAAGAATCAGTGTAGAAAGATCCCAAGTATTTGCGTGGGTTGATCTTGTTGTCGGTTGCACAAAGATCAGGCCGCACTTTAAAGCCGTGCTCAATTCGGCCAATGGTGTATGGGAAAGCACCACCTTAGACCtccatGTGCAAAGCAGACCTTAAGTTTGGgaaatctttcaaaaacaccTCCAAAAATCATCGAACAAACTGCCATTGTAGTTTCTGCTGGCATACCTTCAGAAAGAAACGTGGAGAT

Function

GO:

id name namespace
GO:0033961 cis-stilbene-oxide hydrolase activity molecular_function
GO:0016801 hydrolase activity, acting on ether bonds molecular_function
GO:0016803 ether hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism
ko00670 One carbon pool by folate
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103573 lncRNA downstream 911 13669803 ~ 13673807 (-) False tmem163a
TU103525 lncRNA downstream 179073 13473140 ~ 13495645 (-) False gypc
TU103479 lncRNA downstream 262279 13411812 ~ 13412439 (-) True G69953
TU103390 lncRNA downstream 347305 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA downstream 349049 13310873 ~ 13325669 (-) True G69896
TU103589 lncRNA upstream 3866 13679380 ~ 13682139 (-) True G70033
TU103926 lncRNA upstream 140197 13815711 ~ 13816743 (-) True G70263
TU103938 lncRNA upstream 159732 13835246 ~ 13835699 (-) True G70271
TU103939 lncRNA upstream 161796 13837310 ~ 13837600 (-) True G70272
TU103987 lncRNA upstream 183482 13858996 ~ 13859401 (-) True G70290
XM_043249058.1 mRNA downstream 3236 13642303 ~ 13671482 (-) True tmem163a
XM_043248888.1 mRNA downstream 99764 13515688 ~ 13574954 (-) True cntnap5a
XM_043248889.1 mRNA downstream 159234 13513602 ~ 13515484 (-) True LOC122351673
XM_043248890.1 mRNA downstream 179051 13473135 ~ 13495667 (-) True gypc
XM_043248171.1 mRNA downstream 219868 13449870 ~ 13454850 (-) False faima
XM_043248515.1 mRNA upstream 9471 13684985 ~ 13694187 (-) True LOC122351432
XM_043249524.1 mRNA upstream 84810 13760324 ~ 13765326 (-) True mmadhcb
XM_043248469.1 mRNA upstream 102112 13777626 ~ 13783452 (-) True si:dkey-91i10.3
XM_043248470.1 mRNA upstream 108271 13783785 ~ 13787128 (-) True eaf2
XM_043249528.1 mRNA upstream 145885 13821399 ~ 13823785 (-) True tsn
TU103524 other downstream 179073 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 179073 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 688740 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 936547 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 962894 12708631 ~ 12711824 (-) False LOC122351186
TU103924 other upstream 132308 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 262745 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 520965 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1627589 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1714335 15389849 ~ 15399437 (-) False tmtc4

Expression Profile