RNA id: XM_043248996.1


Basic Information

Item Value
RNA id XM_043248996.1
length 4342
RNA type mRNA
GC content 0.51
exon number 41
gene id sema5ba
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18251236 ~ 18366267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCAGCACAGCGCAGTAAAGCAGCTGCAGGTCGATCGGTGGAAGTCATTCACAGAAAAGGGATACTGCACAGGAGACCTACGCAAAGCGGAGATTGCGGTTTATGCGTTGCTTTTTACGTACGGCAGAGTTTACTCCAGAGGAAGAACATCAGAAGGCTACAGAAGGATTGCTACCTGTTTCAACAGTCCTGCATCCTCAAAGATGACATGCTCGTGATGCCTCTGTGCATTCCAGAAGCCCATCTTGGCAGCTAGAGGAGAGGAGAGGTCGGCCTCCGTCACCATGACAGTGTTGCCACGGGCCGTGGTCCTGGCTGTGCCCGGCCTTATTCTCTGTTTCATCACTCTTCCATTTCCTGCTACACTATCCCAGAGGCCCCCTCTCCCCACAGAACCCTCCCCCCCAGCACCCCACACAAGGCCGGAGTGTACCCGCCTAGAGCACCCCGTCATCTCTATTCAAGCTCTAAGTCCTTTGATCTCCAGTTTCTCCCATCCTGGTGTAAGGGACTACTCTCAGCTGACCCTTGACCTCACCAGGAATGAACTTATAGTGGGAGCAAGAAACTACCTCTTCAGACtgaatttaaacaacatttcccTAATTCAGgcAGCGGAATGGGGCCCAGGCGAAGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACGGAGGTGGAGTGTCAAAACTACATCCGGGTGTTGCTTGTCAACAAGACAGAGGTGATCATCGGTACCAATGCCTTCCAGCCCCTTTGTATCACCAGAGAGGCAGGGAACATGAGCAGAGTTGAGAGGGTGAGCGATGTGGCCCGCCCCTATGACCCCGTCATAATTCGCGACGCTGTAGTGACCGACGGAGAGCTGTATGCTGCCCACGGTCATCGATTTCTCGGCCGGGACCCTGTTATCTACCGCAGCCTAGGAGAATGCACGCCTCTGCGGACCCAGTATAACTCCAAATGGCTTAATGAGCCTCACTTCATCTCGAAGCTTCTGACGTGCGGTCTtttcaccttcttcttcttgaGAAAAGCGCGAGGCGGAACCAGCCTGCGATGGGCGGTGTACTCGAATTGTACCCAGTGTGTAAGGAAGCGACATGGGAGGCAGCTTCTTGCGCTGGAAGACACGTGGACCACCTTCACAACCCGACTCAACATGCAGTCGGGAGAGATCCCATTCTACTACAATGAGCTACAGAGCACCTTCTATCTGCCAGAACAGGATCTCATCTATGGCATCTTCACAACCAACGTAACAGCATTTGCCTCTGCAGTTTGTGCATACAACCTCAAGCGCAATCCGCAGGCTTTCCTTGGGCCTTTCAGCCCAGAACCCAGCTCCACGTGGCTGCCACAAACCCCATCCCTAACTTTGAGTATGGAGACTATTCTTAAGGCCCTGGCAACCACTAATAAGAGCCTGCAAGGTTGCTACTTGGAGGATCTTAACTCTTCCCTCCTGGTTTTAGGAGCCAATCCTGAGCCTTCAGATTCTCCATGGCGACAGGACTACTTTGTGGGCCTGGTgaTGTGTTTAGATGCAAGAGACCATTACTGTGGACAGGACCGAAAGCAGCGGCGTTGCACCACCATACGAGACAACTCTAACATGAGCCAGTGGTTCCAGAACATACTGCCTGTCGGTAAGAACCAGCTGTTTAAAGGAATGGTGTATCACGAGCCCTGGGCTCCATGGCAACCCTGTAGCCATGATGATGGCGAAAACATTAGTACTTGTCTTTGTCGATCAGGCTTGCGATAGTCACGCCCACTGCAGTGCGGAGGTAGAAACTGCTGAGGTCCTACCATTGAAGTGTCCAACTGCTCAAAGGAATGGAGTTGGACACCCTGGTCATCCTGGGGCCAGTGCAGTACAAGTGAGATTGGGTTTGAAGTCCGCCAGCGATCCTGCAGCAATCCTTCTCCCAGGCATGGCGGCAGAGTGTGTGTGGGGACAAAGCAGAAGAACAGATTCTGCAATGAAGGTGTCATGCCCCTCAGCCCATCTTCCTGGTCATCATGGTCGCCCTGGTCCAGAGTGCAGCTCCAAGAGTGTGGAGGAGGTGCCTCTCGCTCCAGGAACTGTGAGAATGGAAATAGCTGTCCAGGATGTGCGGAGTACCAGGCATGTACTGAGTCCTGTCCGGAGGTGCTGTCAAACACTCCCATGGACCCCTTTGGTCCCGTGAACATAACTCCAGGGGGAGGCACGGCAGGAGCAAAGAGCACGCCAGGCATCTGCCGGGCCCTCAACTGGCTGACCTCTCATGAGCTTCAACCAGGCAAGCGCAAGGTGGAGACACGCTCTGCCCCAATGACGGGACGGGTAACCCATAAACAGACTctCGTTGAGGAGCTTCTGAAGACGCCTGGTGTACGCCTGACAGCTGGCTGGTCATCATAAATGTGGTCAGCTTGCACTCAGGAGTGTGCCAAAGGCTACCGGTGACGCAGAACGCACTTCTGCACCAGCGCAGAGGGCAAAAGCTGCCCTGCTGCCTCGGGATCTCCAGTAGAATATCAGGACTGTAACCTCAGGCCCTGTGCAGTTAACGGCGCCTGGTCTTGCTGGTCATCATGGTCGCAGTGTTCAGTGCCCTGTGGAGGTGGGCACTATCAACGAACGCGCACATGCACCAGCCCTACCCCTGCCAATGGAGGGGACATCTGCATCGGCTTGCACACAGAGGAGGCTCTTTGCAACACGCACACCTGTGATGGTGGGTGGATGGCCTGGTCGGTGTGGTCTAAATGTGATGACTCGGGCCTGCAGCTGCGCAGTCGAGTGTGCGGGGCTCAGTCCACACCATGTGTAAACAGCTCCCAGCACCGAGACTGCAATGAGATCCCAGCCATTCTCCCGGCATCTAGCTATGAGAAGGACCAACAGTGTGGGGGGTTCACTCTGCTTCACCTGATAGCTACAGGTGTGTCGTGCTTCCTGGGTGCCGGTCTGCTGTCCTTCCTGGTGTATGTGTACTGTCAGCGTTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATCCATCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTCTGAATAAGAACAATTTGCTGCCGGATGAGAGGACCAACTACTTCCCATCACCACTTCAGCAGACGAACGTGTACACCACCACGTACTACCCCACAGCACTGGGCAAATATGACTACCGACCAGACTCCTCGCCGTCTCCTTGCAGAACCTATAACCACAGCTGAGACATTTGTCCCATCCGTAGCTTTATTGCCATCTCCTAAAGGCCTCCACTTTCCCCACCCATACACTCTGCACTGATAAGGTGCTTTTTCCAACATTCCAGCCGATTATTTTCCCTAAAGATCTCTCCCCCAAGGACTATGTCACCTAAGTCATGCCTTACGGTGTCCGACTGGGGGAAAAGTCCAGTGATTCAAACAGCACTTTTTAAAGATTGTGTAGCTACACTGACTTTGATATACTGATGTCTTGATTGATCGCTGCAGAACTCCCGTTACTGGAAAGAGGTTTTGCTGAAGCTCAAGGTGGGAAGAAAAAATTGCGCTGGCATCCCGTACCACTCCAACAATATCCATTACGGGAAATGCAATCTGCCACACTGTGGCAGTTCTTTTTGAAACTACAGAAGAAGAATAGATGGACACCAGACAAAAGAGAGCAATCAATGGTGACATTATTAGGTTCGGTTAGAACGGTGGAATTGTGTTACCTTTGGATGCAAATGTAAGGACGTCCCACTGACTTCCAACCTTTTGAGGGGCAAATCTCTGACAAAAGAGGATGGGTTGCACGATCAATGCATCTCCTGGGTGAACTCTTCAGATATGAGTTCGGAACAAAGCTGCAGAAAAAAGAACTGCTTAAAATAGGATGCCATTCAGAACGGACTCTTATCAGAAGCGAAATATAGATTTTCAAGCACGTTAAAAGGCCAGAAGAATGCGTCATTATTTCCCTGAAAAGTTGAAACGCCTTTCTTACTTGCGAATGCATGGGAATCGAGGAATATTGCACCAACATGGAATATGCTTAGATCTGAAGCAAACATGTTCTACTCTCTTACTGTAAGTCCCGGTGGTCATATTAAATATGACTGGGTTCAAACTGAGACggactatattttattatgaaaaaatgtagaaaatactGATAGCTTGGCACTTGTTTTATACGGCTATTTTAAAGAGGGAATTATTCAGCAGTTGTAGGATAGATGGATAATAGAGTTTATTTAAGATGTGAGTTCAAACATTGACGGAGCTATACTgaacatttcatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105518 lncRNA downstream 24449 18222314 ~ 18226787 (-) True G71293
XR_006251849.1 lncRNA downstream 515317 17733203 ~ 17735919 (-) False LOC122352098
XR_006251848.1 lncRNA downstream 515317 17733203 ~ 17735919 (-) True LOC122352098
TU105360 lncRNA downstream 558416 17665519 ~ 17692820 (-) True G71194
TU105352 lncRNA downstream 589791 17661216 ~ 17661445 (-) True G71190
TU105579 lncRNA upstream 142173 18508440 ~ 18510009 (-) True G71339
TU105581 lncRNA upstream 144906 18511173 ~ 18511528 (-) True G71341
TU105676 lncRNA upstream 242560 18608827 ~ 18695465 (-) True G71389
TU105682 lncRNA upstream 242560 18608827 ~ 18697031 (-) False G71389
TU105697 lncRNA upstream 287360 18653627 ~ 18654751 (-) True G71400
XM_043249405.1 mRNA downstream 45775 18197126 ~ 18205461 (-) True hspbap1
XM_043249540.1 mRNA downstream 212568 18028354 ~ 18038668 (-) True ralba
XM_043248852.1 mRNA downstream 599115 17649975 ~ 17652121 (-) True dnajc28
XM_043248995.1 mRNA downstream 676862 17559528 ~ 17574374 (-) True zp2l1
XM_043248036.1 mRNA downstream 729676 17373161 ~ 17521560 (-) False ncam2
XM_043249266.1 mRNA upstream 60805 18427072 ~ 18492873 (-) True adcy5
XM_043249267.1 mRNA upstream 60805 18427072 ~ 18492869 (-) False adcy5
XM_043249567.1 mRNA upstream 127819 18494086 ~ 18499894 (-) True hacd2
XM_043249579.1 mRNA upstream 168385 18534652 ~ 18545151 (-) False si:dkey-219c10.4
XM_043249578.1 mRNA upstream 168385 18534652 ~ 18545151 (-) True si:dkey-219c10.4
TU105258 other downstream 995745 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1427461 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1427542 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2479372 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2851799 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 203488 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 1354231 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1429990 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1515557 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2122897 20489164 ~ 20503890 (-) False G71938

Expression Profile