RNA id: XR_006251770.1


Basic Information

Item Value
RNA id XR_006251770.1
length 1342
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122351563
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20296930 ~ 20302436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGATGAGCACAAAGTGGCGGAGTGACGAATAGGGCCTCAGAGTAATAAAACATTCACTACATCGCTGCCAAACGGCCACGGTGAGCCACTTCCTCATGGAGACACGATTAACAAAAGGAAAACCTCTCAGAAAGAAGCATTGGAATACTTGCTAAAGACGAATCGCACTGCCTGGATTTCTGCTGGAGTTGTAGCGTCACTTTATCATTTAGGTCAAACGAAACTAGGCCACCCAGTGAGACTGTAAGGAAATCACAGAAAAGTGGATCCAAGGGCCAAAAAGAAAAGCGATCCTTTGTTTTAGACAAACCGTTGCTCAAGGTGACCTGAAGCAGTTTGTTTTCCATAAGATGGATAAGTGGGCAACATCATCCAGCACAGCACAGGGGAATGAGAGCTCGTCTGCCCCAATCATATTTTCTACCCTGTCTTCACGGTAAACACCAATCTGTGGGACCCATCTAGGACGAACTAGGATGCATTCACGAAGACATTATCCAGACTAAACACACTGCCCAGAATGTTTCAAGCCTCTCAGAAGAATAACTGTATATCAATAACAGAGATTATGGAGGTATAtgattttcatataatttatatttatatgtatttatgtctatctatctatctggttGTGTTGTTCTGCAATACCCTGAGACTGTAAAGCATAAATCAATCTCGCGTCTGTAAATTTGTCATCTTTGCATTGATATGTCATGTGAGCAGTACACAATTTCATGAGGCATAAGGGTCTGAACTGAGGTAGCACATTATGAAATGGAATGTTTTGATACACATTTTAGttggtcattaaaaaaatgaatcgttttGTGGTATCCTGGGAAACAAGGCCAAGGGAAATTTTAACTTCTCCAGTTTAAGATAAACCTAAAAATGGATATGTAGAATTAAAGGGTTATTAATACTTAAtctgaacaataaaaataacctttGTATCCAAATATAGCATAGTTGAAAAACTAAAAGcacatacaaaatatttgtgtgtgtgtgtgtgtgtgtgtgtgttcttctcaGGATATTAGAGAACAACACAACTTAACATGTTAGTTAGGacgttagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagacataATAGacacattttgcatgtttattttgtaaaccttacacttaaaaattgtatttacagtTAAGGAAAAAGCCTGAAGAAGAATGAAATTGGTATTAAGGTCACCAATAAAAGCATGCTCAGATCAGACAAATTATAAAAACTCCAGTTCACTTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106568 lncRNA downstream 78883 20215420 ~ 20218047 (-) True G71919
TU106551 lncRNA downstream 128326 20163123 ~ 20168604 (-) True G71912
TU106184 lncRNA downstream 355383 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA downstream 374239 19916199 ~ 19922691 (-) True G71732
TU106145 lncRNA downstream 444343 19848339 ~ 19852587 (-) False nab1b
TU106577 lncRNA upstream 76224 20378652 ~ 20389699 (-) True G71924
XR_006251769.1 lncRNA upstream 131688 20434116 ~ 20434969 (-) True LOC122351562
TU106617 lncRNA upstream 201840 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 201898 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 299556 20601984 ~ 20602557 (-) True LOC122351561
XM_043248701.1 mRNA downstream 1552 20271220 ~ 20295378 (-) False tfpia
XM_043248699.1 mRNA downstream 1552 20271220 ~ 20295378 (-) True tfpia
XM_043248702.1 mRNA downstream 1552 20272793 ~ 20295378 (-) False tfpia
XM_043248700.1 mRNA downstream 1554 20271220 ~ 20295376 (-) False tfpia
XM_043249235.1 mRNA downstream 26398 20248988 ~ 20270532 (-) True calcrla
XM_043248706.1 mRNA upstream 98956 20401384 ~ 20403699 (-) True LOC122351553
XM_043249002.1 mRNA upstream 108967 20411395 ~ 20417109 (-) True LOC122351723
XM_043249003.1 mRNA upstream 115444 20417872 ~ 20421682 (-) True LOC122351724
XM_043248703.1 mRNA upstream 119254 20421682 ~ 20423199 (-) True LOC122351551
XM_043249004.1 mRNA upstream 120485 20422913 ~ 20426727 (-) True LOC122351725
XR_006251780.1 other downstream 403615 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 492331 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 575193 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1727048 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3041439 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 186736 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 186736 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1406860 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1869035 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1996744 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile