RNA id: XM_043248408.1


Basic Information

Item Value
RNA id XM_043248408.1
length 3345
RNA type mRNA
GC content 0.46
exon number 13
gene id etv5a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13974047 ~ 13985162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAGTCCATTTACAAAACCTCATTCAAGTTTTGAGCGTCGGAGAGAGCGCATCTATTGATCAGTCCGAGCGCACTGCATCCTTTTGGGATTAAAATCTGaaacgtgttttttttcaatccaCTGCGAGAGGCGCGTCATCTATACGaaaacagaagaCCCAAAGAGGTCAATACAACAATCGCTTTTAAGCGAAGACCCTTTGCTGGGAACTTTCTTGAAGACCCAGGTGACATGGACGGATTTTATGACCAGCAAGTACCATTTATGGTCCCACCTAATCAAAAGTCCTTACAAGTGGAGGAACCGTATGGCCGAGCAGTGAAcgacagaaaaagaaagttagTGGAGACTGAACTCGCTCAGGACACAGAGGAACTTTTCCAGGACCTCAGCCAGCTGCAAGAGATCTGGATCGCAGAAGCTCAGGTGCCCGATGATGAACAGTTTGTCCCAGATTTCCAGTCGGAGAGCTTGATGTTTCATGGCCCACCACCAGTGAAGATCAAACGCGAACTGAGTCCCTCCAAAGAGCTGTCTCCCTGTAGCCAGGATAGAAGTCCCATGCCGTATGGAGAGAAGTGCCTTTACAGCTACAGTGCCTATGAAAGGAAGCCCACAGCTGGGTTCAAGCCATTGACTCCTCCCTCAACGCCCGTCTCACCATGTGTCCCCACCACCACTCTGGGGACACGTCCCCTGCATGAACAGACTCCTCCTCCCGTATCCAACTCAACATTAGGGCAGCGTCTCCTTCATGGGCAGCCTTCAATGACCAAGACCACCCCCAGCCAACAGGCTCTCCCTCACCACAGCCAGAGCCCACCTTTTGCAGTACCCTGTCCACCCCTAAACCGTGACTTCAGTAATGAACCTAGGTTTCAACGGCAACTTTCAGAGCCTTGCCTTCCATTCCCACCTTCTGACACCCAAGGGAGACCCAGCTTCATGCCACAGGTCCCCAGCACTTCACCGAGAGATGGAAGGCCACCATACCATCGCCAAATGTCCGAGCCCCTGGTTCCTGTGCCTCCTCAGGGCTTCAAACAGGAGCTCCTAGACCCCCGCTATGCTGAGCAAGGTGTTCCCAACATGGGCCCATCCCAGGCTGCCTTCCACCCGATGGCCATCAAGCAAGAGCCACGAGACTTCTGCTTTGATTCTGAAGTGCCTAAGTGTCAGTCTTCATTTGGGAGAGCAGCAAGCTTCTACCAAAACCATGAGAACTTCTCATTTGACAGAGATCAGCAATTGTATTTCGACGACACCTGTGTGGTTCCTGAGAGACTTGAAGGGAAGGTAAAGCAAGAGCCCTCTGTGTATCGTGACGGCCCGCCTTACCAACGCCGCGGCTCCCTCCAGCTTTGGCAGTTTCTGGTTACACTGCTGGATGATCCTGCCAACGGTCACTTCATAGCCTGGACAGGACGTGGAATGGAGTTCAAGCTTATTGAGCCAGAGGAGGTGGCCCGGCGCTGGGGCATCCAGAAGAACAGACCAGCCATGAACTACGACAAACTCAGTCGCTCACTGCGTTACTATTATGAGAAGGGAATCATGCAGAAGGTAAAGGTCGCTGGCGAGAGGTACGTGTACAAATTTGTGTGCGATCCTGAGGCCCTCTTCTCGATGGCCTTCCCAGACAACCAGAGGCCCAACCTTAAAGCAGACCCTGACGGCTTGCCCGGAGTGGACGACGACACGCTTCCTTTGGCGCACTATGACGAGGGGGCTTCATACCTGGTGGACGGTGGCGAGCAGTGTGTTGCTGGGATGCCTTTCCCCGACGGTTACGTCTACTGAGCATGAACTGTTGATCTGACTGAAACACATCTGTCCCTATTGCCTCAACTCCTTTTGAACTGTTGCCCACTTCCAGATTAACCCTcccaatcatttaaaaagaacgAGGAGAAATCTGCGAGCCACCTTTTCTCAGGCGAGAGAAAGGTGTCAAGGAGGTGAGGAAAGCTGGCTTCCCACGCTTAACCTTCCTCGTGGCAAACCGGTCGCTGCCACATAGAAGAAAAGGTTGAGCTGGAGCCGACCGGTGCCGAAAGACTGACAGATCTCACTGCGAGAATTGTAGCAATTCTGTTTTTGAcaatctgctttttttaaaaaggaaaaattggCAACAAATTATTTAGAGACAtcctcacagaaaaaaaaatgcagcactaTGTAATAGTTGCCTTTTTGGTCCGAATTAATTTTGTTGTACCTCCAAACCATGTAGACAAGAAGTCAAAAGGGCTTTATTttacaaggcaaaaaaaatgacCCATTTGTTTCTTCAGACTTGTTAAGACTCTTTAGAAAGCTGGCTTTTATACAACACTTTTTGTTGAACTAAACGTGGACGGCTTTAATTATGCTGAGGAATACAGaacatgttttttgtattatttggttttgttctgAGTCCTTTGTCAAtgtgttggatttttttttattaactttttcgTTTTCATGCTGGTTAACCCAGGGGTTGTTGATGTGAAGTTCAACCAGAGGCACTCTTAGTATATTTAGTCAACTTCACAGGACTGTTAACCcattttacatgtatttctGTATGCTTGTCGCTATTTTACTTTTAGGTTTCACTTCCCAAAAAGCCAAATTTTGAATTGCAGAATTTTCTCACTAGACAACATTCAAAAGGGATGCACTAGTCAGACTTTTTCCATGCTTTAGTGTAAGTAAAGGTCAAACAACATTTTAGCCtcttacattattatttttggcattGTTCTATATTTTAATGCACCAGGAGAGCAGGAGTATCAGGGCCTTGCATGCAATAAGGtacaagaaaatacattttcctgGTCAGCTCCTCATTGCCAATCTCGAGATGTTAAAAGACCACTGCTTCCTTTTGCATGACGTATTCAATGATCAGCTGTCCACTAACATATCGCTTTATGCTGGACAAAGAAGAAATTGTggagttatctttttttttttttttttttttgaaaaagatgaacttatatatttttgcaaagtctgcatttatttgattttattgtataaGCTGTATAGTTCTGCCTGTAACAGATACTCTATGTATGTTTTAAGTGGATCCCTGTGTTGCAGTGACTGCACACCAGTGGTTACCGGACACCCTTTCATGGTGGGTTCGAGAACAGTGCCTTTTAAATTAGAGGTGCAGCTtctaaaataactgttttctcaTGGAACGAGGGGCTTGTCTCTATCCACCACAGAAGGGTTGTCTGCACTTGTACAGGCTTAACCTTGTCCCTCACAATGTGTACCTTACACTGCTGAGTTTATAATCTGTACTGGGTACAATAAACTGTCCATTCTGCTTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035108 limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15593 ETV5; ets translocation variant 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104012 lncRNA downstream 49211 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 49943 13923749 ~ 13924104 (-) True G70308
TU103897 lncRNA downstream 62194 13881750 ~ 13911853 (-) False rif1
XR_006251857.1 lncRNA upstream 188655 14173817 ~ 14189001 (-) True LOC122352120
TU104049 lncRNA upstream 259125 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 377877 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 492170 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 604696 14589858 ~ 14590275 (-) True G70393
XM_043248144.1 mRNA downstream 1985 13961757 ~ 13972062 (-) False rbm44
XM_043248143.1 mRNA downstream 1985 13961757 ~ 13972062 (-) True rbm44
XM_043248526.1 mRNA downstream 12950 13925913 ~ 13961097 (-) True itgb5
XM_043248404.1 mRNA downstream 52450 13913874 ~ 13921597 (-) True tnfaip6
XM_043248863.1 mRNA downstream 61104 13895771 ~ 13912943 (-) False rif1
XM_043249448.1 mRNA upstream 107765 14092927 ~ 14093892 (-) True crygs3
XM_043248566.1 mRNA upstream 111713 14096875 ~ 14097614 (-) True crygs4
XM_043249650.1 mRNA upstream 186627 14171789 ~ 14172518 (-) False LOC122352116
XM_043249649.1 mRNA upstream 186627 14171789 ~ 14172518 (-) True LOC122352116
XM_043249256.1 mRNA upstream 204442 14189604 ~ 14190624 (-) True LOC122351874
TU103993 other downstream 34179 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 160720 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 478402 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 478402 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 988069 12985124 ~ 12985978 (-) True G69757
TU104031 other upstream 211317 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1317941 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1404687 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1786259 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2831978 16817140 ~ 16823694 (-) False G70986

Expression Profile