RNA id: XM_043248891.1


Basic Information

Item Value
RNA id XM_043248891.1
length 3311
RNA type mRNA
GC content 0.52
exon number 14
gene id man1a2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14795431 ~ 14862092 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTAGCTGTTGCAGTAACAACATCCTGGATATTGGAGCCTGGCGGCGCACACGGCTACAGAAAATAAAGGAGGAACCAAGACGTAAGGGAGGCGGTGGTATTAATCGCAAATGCTTCAGCGTATAGAAGCGCAGACATGAACGCGAACCTGGCAGCTATCGGGCATTAATTGTGGATTTATGGTCTATGGCGCCGATTGATCCCGAGGCACCGACAAGGTGATGCAGCAGCGGCAGGACGGGATCGGTCCGCTACACGGCTGCCAGCTGAATGCCTTTACTGGAGGAAAACGGCGCAGCACACGTCCAGCGCAGGCCGGCGTGATCTTTCGTTAAAATAGGACAGTATGTAGAGAGGATCAGCCAGCGGTTGCTATACACCCGTGTTTACTTTCATTATTGTATCGGCTCTCGATATCGCTCTCCGGTTCTGAGACGCTGCCACGGCATCAAGCGAATCGGGCCTGGGCTGAAACACCGTGCGCTCTTCGCGATATTTACCGTGGAAAGCACGTAATGCGAACGCGAACTTTTATCGTTAACAAGCGTAACGAAAGCGCCTAGCGCTACATCATCGCGTTTACTATCCGCGTGTCCAGTTTTCTTTATGTTTACTTAGGTTACGttgcctttttgtttttctccttgTCAGACTGATTTCCCTTATCGATAACAGATTATCGCATTGCCAGTTTGAGAGAAATAATACCCCTAACGGGCGGTGAGGGTGGACGCGCCGTTTATCGTGAAGATAACGACTCGACCCAACCCGCCTCGACTCAGAAGCTTTCGGATCAAAGCGAGGATCATGGATCGGAATGATAAAAAGAGCCTCACGagTATGTGGAATCAGTTGTGATCGACAGGACAACTCCGTTTCTAAGAGATAAGCAGAGGTTCGGCAGTAAAGCTCCCATTACCGCAATGAGATAATAGTGTGGCATACACAGAAACAACCTTGACACTTATCCCACCATATTCCAGTTCATCATCAAAATATGACCACGCCGGCTCTATTGCCACTATCGGGACGTAGGATACCTACCCTCTCGCCAGGTGCCTCCTCATTCCCCCATCACAGGGCCACCTTGCGGCTCTCAGAGAagttcatcctcctcctcatcctcagtGCCTTCATCACCTTGTGCTTCGGAGCGTTTTTCTTCCTCCCGGACAATTCCAAACACAAGCGCTTTGACTTTGGTTTGGAGGACGTGTTGATACCGCACATCGAGTCGGCGAAGGAGGCGAGGCACAGCAGCAGACAGGTCATACACGGCTTGGGAGCTCACGATGAGCATCGACACAGagaggaagaggagagccTTCGTGACAAGATCCGGGCAGATCATGAGCGGGCACTGCAGGAAGCCAAGGAAAAGCTCCGTAAATCCAAAGAGGAGCTGAAGGCAGAGATCCAGACAGAGAAGACCAAGGTAGTCGAGGACCTGAAGAAGAAAGATGGGCCCAAACCACTTCCTCCAGTACCTATGCCCAAACTGGTAGGGGTCAACGATGGTGACCCAGGGGACCCTGACACCAAGGAAAAACGGGATAAAATCAGAGAGATGATGAAACACGCGTGGGACAGCTACAGGCAATACGGCTGGGGCCACAACGAGCTCAAACCCATCGCCAAGAAAGGACATTCCACCAATATCTTCGGTAATTCCCAGATGGGGGCCACTATAGTAGACGCCCTGGATACCCTTTACATAATGGGCCTCCACGATGAGTTTAAGGATGGCCAGGAGTGGATCGAGCAAAACTTGGATTTCGGTGTGAATGCAGAAGTATCTGTCTTTGAGGTCAACATCCGCTTCATTGGAGGGCTTCTGGCTGCATACTATCTCTCCGGACAGGAGGTTTTTAAGGTGAAGGCTGTCCAGCTGGCAGAAAAGCTGCTTCCTGCCTTCAACACCCCAACAGGCATCCCTTGGGCCATGGTCAATTTGAAGAGTGGAGTGGGACGTAACTGGGGCTGGGCATCAGCAGGAAGCAGTATTCTGGCTGAGTTCGGGACACTGCACATGGAGTTCGTGCACCTGACGTATTTGACTGGAAACCCTGCCTACTATCAGAAGGTGATGCACATACGGAAGCTGCTTGCTAAGATGGACAGACCCAATGGGCTTTACCCCAACTACCTGAACCCACGCACAGGACGCTGGGGCCAGCATCATACCTCAGTGGGGGGACTGGGTGATAGTTTCTATGAGTACCTGTTGAAGGCCTGGCTAATGTCTGATAAAACGGACACCGAGGCACGCAAGACGTATGATGATGCCATCGAGGCTATCGAGCGCCACCTCATCCGCAAGTCCAATGGTGGCCTTACATTCATTGGGGAGTGGAAAAACGGACACTTGGAGCGTAAGATGGGTCACCTGACTTGCTTTGCTGGGGGCATGTTTGCCCTGGGAGCTGATGGGTCGCCAGATGATAAAGCTGGACACTATCTGCAGCTCGGAGCAGAGATCGCACACACCTGCCATGAAAGCTACGATCGCACTGTGCTGAAACTCGGTCCAGAGGCCTTTAAGTTTGACAGTGGGCTGGAGGCAGTGGCTGTGAGACAGAATGAGAAATACTATATCCTGAGGCCTGAGGTCATCGAGACGTACTGGTACATGTGGAGATTTACCCACGACCCCAAATACAGGCAGTGGGGTTGGGAAGCAGCACAGGCTATAGATAAATACTGCCGAGTAAGCGGAGGATTCTCTGGTGTCAAAGACGTCTACTCCTCCAACCCCACCTACGATGACGTCCAGCAAAGCTTCTTCCTGGCTGAAACGCTCaaGTATCTCTATCTACTTTTCTCCAGCGACGAGCTGCTGCCTCTTGAGAACTGGGTGTTTAACACGGAGGCCCATCCTCTGCCCGTCCTGCACCTGGGCAACATCACGCTGCCTGGCAGCGAGACCCAGCGGTAGAGCGGACTCACCGGGGGGGCGCTCTCCCCCCTCGCTCGCCCCTCTTTAAACGCCTCCCTCCTTGTGAAAGACAGCAGCTGCCAGCTCAAAGGAGAGGAGAGAACTGTACCCACCAACCACCGTCTCCTCCTGGACTGTGAATCATGGGACTACAGTGAACGGAGGAGACCGGAACAGACCCGACTCTCTTTATCTATGTCTCTCTCATATATTCTCTGAAGGACAGACTGCCGGATTGATCACGTGTGTCTCTCTCCTGCGGGCGCTGGTCTTACACACACTGTACACGCATTAGCGGACTTAAAAGACCTTCTGAAGTGGATGTGCGTTTCTCACTGGGGAAGGATTTTAACAAagttcctttcttttctttgc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104140 lncRNA downstream 200089 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA downstream 200089 14594424 ~ 14595342 (-) False G70396
TU104132 lncRNA downstream 205156 14589858 ~ 14590275 (-) True G70393
TU104117 lncRNA downstream 232439 14477332 ~ 14562992 (-) True G70382
TU104075 lncRNA downstream 422757 14363039 ~ 14372674 (-) False LOC122351495
TU104213 lncRNA upstream 54708 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 54708 14916800 ~ 14918840 (-) True G70438
XR_006251854.1 lncRNA upstream 75032 14937124 ~ 14942863 (-) True LOC122352110
TU104296 lncRNA upstream 113320 14975412 ~ 14981853 (-) True G70494
TU104307 lncRNA upstream 151265 15013357 ~ 15273029 (-) False G70503
XM_043248485.1 mRNA downstream 6141 14783457 ~ 14789290 (-) True tent5c
XM_043248482.1 mRNA downstream 36845 14749258 ~ 14758586 (-) False wdr3
XM_043248481.1 mRNA downstream 37222 14749258 ~ 14758209 (-) True wdr3
XM_043249050.1 mRNA downstream 176380 14614726 ~ 14619051 (-) False hao2
XM_043248126.1 mRNA upstream 6667 14868759 ~ 14874692 (-) True trim45
XM_043249517.1 mRNA upstream 13400 14875492 ~ 14877656 (-) True vtcn1
XM_043249515.1 mRNA upstream 22019 14884111 ~ 14898125 (-) True morc3a
XM_043249516.1 mRNA upstream 22019 14884111 ~ 14894117 (-) False morc3a
XM_043248244.1 mRNA upstream 139372 15001464 ~ 15006670 (-) True klf5b
TU104031 other downstream 541655 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 855563 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 982104 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1299786 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 441011 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 527757 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 909329 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1955048 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1955048 16817140 ~ 16823775 (-) True G70986

Expression Profile