RNA id: XM_043248932.1


Basic Information

Item Value
RNA id XM_043248932.1
length 5428
RNA type mRNA
GC content 0.43
exon number 10
gene id slc39a10
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12619276 ~ 12640868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATGCAGTTGGCTGTATTTTGGCTCTGTTAACCGAAAGCCTTGAGAACAAATTGCATGTATTTAGTCTATCTCGTGAAATAGAAGTTtggctatgtttttttttttttaaaaagctgtgatAGTTCCAATGCTTTTTAACCAGAAAGCTTGGGTAAGTGATGCGTTTTCCTGAGTATATGGACATGTCATGATGTCTATACTGTAAAGTCACTGttaacagtcatttttattttattctatttgatGGCTACTTCAGGCCTGATTAGCTGAAATCTCTCCCTCCACCCACTCCTACCCACCCACCTATCAacacttacaaacacacatgtcCAGTACACCCTCCCCTTTGCACTAAATCACCACACTTGAAGAGTTCAAAACATCAGACCTCGTTCCATATTGCTGTAGAAGAGCGTACTCTGCCTGAGTTGACAGCATATGACCTGTTCCTCCACCTCCTGTTGAGACAGAAAGAGAGGTTTCTAAGCGAGGAGATAATGAGAGTTCACACACATACCAGATTCTGCTTTCTCTGCGTGCTGACTCTGCTGTATCATCAGTGCAGTCACTGCCATGAAGGAGGGTCCCACCATCACCACGGGCACAACCACGGAGACCATGACCACGTTCACAGTGACCTGCAGATTTCAGAATTGTCCTGCGATGGTTTATCAGACCAGTTCGTGCACAGCAGCCATGGTGAACCTGCAGAGAACGAGCAGCGTTACTACATCATGCAGTTGTTCTGTCGGTACGGCCACAAGGATCGTCTGGATTTTAAAGGCTTCCAGAGTCTGCTGCTGAGTTTAGGGCTGGGTGAGGTGCGCGTGGTCGGGCTTGAGCATGAAGATCTGGGCCACGATCATGTGGCACACTTAGATATTCTGGAGGTTCAGGAAGGTCGGCATTCGCATTCAGCGGGCCATCCGCATCTTCATCAGAAGCCCCACACCTCACACAAGACCCATCAACATTCCCaccatgaaaatgaacaacACGGTCCTACCGAGGAGCTACCGTGCAGCAAAAGCACCGGAGCCGAGAGCACCACTCACAGTGGATCTGAGAGACATGATCATGACCATGAACATGATCACCACGATCACGATCATGACCATGAACATGAGCATCATGATCACGATCATGATCATGACCCTGAACATGAACATGAGAAAGACACTGATCACAAACATATCCACAGGCATGTTACAGACAGTCCTCAGACCCACGATGACCATGGTCAACTTGAGCAAAAGAGTAGTGAACATGCACATGAAAATAATGATCTAAGTGACCAAAACCACCATCATCATGACCACCATCACCACAAGCATCCCCACCCTCATCTCCATGGTCCTGACAGCGTGGAGCACAACACAGCAACCCCACATCTCACACCCAGAATACAGCTTTCTGCTCCGACTGAGCTACCCACCACACAACCCAGAAGAAATGGCAGACCACCTAAAGCCAGAGCTCATCGAGGCCGCAACAAGACCAGCATCAGTGTTACTCAGGCTGGTGAGCTGGAGAAAAGCAAAGTTGACCACGACCACAGCAATCAGAATCACAGCCCTGTTCAGTCCCAGAGGGGCAGGAGAGAGGTTCCAGGAGAAGATCTGTCTGTAAAATCACACGCACATGGCTTCCTTCACCAGCATGAAGAGTGTCTGAATTTAACAGAGCTGCTAAACCAATATGGACTGAGCTCGGATTCTCTAATATCTCCAGCACAGTTCACCTATTTATGTCCAGCTCTGCTCTATCAGATAGACAGACGCTTCTGCATCCTTCATTATCACCACGTTGAGGCTGATATACAAGACGAACCTTCTTCAGTGTGGGTTTGGATGTGGGGCTTTGTGTCGATCACCATTATCAGCCTGCTGTCTTTGCTGGGTGTTGTTCTGGTACCCATCCTCAACCAATCCTGCTTCAAGTTTCTCTTGACCTTCCTGGTGGCTCTGGCAGTGGGAACCCTCAGCGGTGATGCCTTACTGCATCTACTCCCACATTCTCAAGATGGCCATGATCACAGCCACGGAGGACATGAAGAGGAAGAAACTGAAGAGTTTTTTCTGACCAAGTTTGATGGAGTTTGGAAAGGACTGACTGCACTAGCAGGAATCTACCTCCTCTTCATCATTGAACATTGCATTGGCATGTTCAAACACTACAGGGACCAAAGGGGAAGCCTCTGCCAGAGGAAGAAGAAAGGAGAGCAAGCAAAGATTGGGCGGAAGTTGTCAGACCACAAACTCAACAGGCGTTCAGATGCTGAGTGGCTCCATCTGAAGCCTCTAACAGAGGgaGAAAGTACAATGTGTGAAGCCGGACACAATGACACTCAGATGACAGAGTTACAGCCATTGGATTCACCCAGCAAAATGCCACTCTCCATCTCTGATTCAGATCACCCCTACAAGGAGCCAGTAAAAACAGAAGAGGACAGCATGCCAAAGGCAAAATCAAAAAAGCATGGACATGGAAACGGACATGGCCATGGCCATGGTCACTCCCACCATGGGCACTGTCACTCTGACCAGGAAATGAAAGATGCAGGGATCGCCAGCATAGCATGGATGGTGATCATGGGAGATGGCATGCATAACTTTAGTGATGGACTTGCTATAGGTGCTGCTTTCAGTGCTAATATTACAGGTGGCATTAGTACTTCAGTGGCTGTGTTCTGTCACGAACTGCCTCATGAACTAGGTGActttgctgttttattgaaGGCTGGGATGTCAGTGAAGCAAGCCATTGTGTACAATGTCCTCTCTGCTCTGATGGCTTATGCTGGCATGGTGATCGGCACGGCTGTGGGACAGTACACGCACAACGTCACCAGCTGGATCTTTGCTGTTACTGCTGGCATGTTTCTCTACGTGGCATTAGTGGATATGtTGCCAGAGATGCTTCATGGTGACAGTGAGGAGCACAAGCGCTGTGAGATGGGTCACTTTGTCCTGCAAAACCTGGGCATGCTCACAGGGTTCGGCATCATGTTGCTGATTGCCATCTTCGAGGATCACATTGTACTTGACTTTGGCTTCTAACCAGAGCCTGAGGTCAGGGGTGGCGTCATTCATCAGCTACATTCACACACGTGCTTTGCCTTAAAGTGGCTTTGTTTTGTGATGGTACAGTCTTGCAGGCATGTCTCAAAAGACAGCATCAGTAGCTTACAGTGGACATGGacatgcaaacaaacatgtttacatttcattatctCATCTCTTCTTCTCTAGGCCACTCAAAATGGTTGCTTGTCGTCTTCAAGGCCTTTGTAGTTGTAGCTTCTAGACCGTTCTCTCTTGTccttgttcgtttttttttttggtttggttttttttggagTATGTGTGTACAATCAGACATATCCACAGCACATGAGAAGCACTCCCCAGTATTTGGGTTATCCCTTTAATATTGTAGTATTTTGTTGTAGGACTGTGTCCTAGAGAGAAGCAGCTATTCATCAGTCACTCATTCAGTGTCATGTTTAGCTCTTTCATTCATCTGTGCTGTATCTCATAGTCCATTCATTAGTAACTGGCGTCTTGTGCTGTGTATGTCTAGTGTGTCACACCATCTCAGTGTCAGGCACAGAACTGTGCTAATATGGTGCAACAGAGTCCAACTGGCATCAACtctgcagttgtttttttatttttatttttttttattgaggaGTACTGGTCAGTACTGTGTGCCAGgatcatgaaaaacaaaacacttgagCTCTTTTCTTTACTGGTCTCACGCTTCGTTGTCAACATTGACTACTTGTTCGTTTCTTACACTATATTTACTTTTCATAGTAATGGGAGAGTCCTCAGTCTTAGAATTTCATTcgcttgtctttttttattattagttattattggCTAAGATTGTACTGGTGATTTGGCCAACTCTTGAGCATTGAAGAAATATCGGTACGCAACTGTGTTTTGAATAACCTCCGACACGGTGCCGCCAAAAGAGCGATCGTAGTGACTGAACAAGTCCAGTATTAAAGCCAATGCTAAAACactgtgatttttaaatgaagaacaaCTGTCTACACTTATCTGTCCATCAAGgaatacatacattttctttGGGAAGTCTATTTGTTCATTGATAAAATAGTAATTATCATGATCTAGACTACTTTCCGAGTTGATTTTCATATCCAAGTGGAGTTGTTGTAAATAATGATCTTGTTACACTTTGAAGAAGTTCATGAAATAATTATCTTCCCCATAAGGAGATTTGCTACTgaagacttgtttttttttttttttttttttgttcaaaagttGGCATTTTGAAACACcttttgttactttattttaattttatgacatGTTTGGTATTACTGGATAATTTGTGCAAATTTCAGAATGTTATTTTGTGAGACATCAGCACCTTTTATACACTGACCATCTAAAAACTTGCTTTCTGGGAGAaccattcctttttttttaacctaaacaTTGAGTTGGCCattataaaatgttctttttttttgacaatcgtatacattttcatttgttgaCACCCTcctgttttataaaattaatgcaCACATTCAATTATTGGCCTTATGCGCACTTGTATGAAACTACAATCAGATCTATAGAACGTCCGTTCATCTGTCCCCCGTTGATGTGATTCTTATTAACGAGTGTGCAACATTTTGATTGTGCCAAAAATGGGTTTCTAAAATGGCGCACAAGCACTGCCTGTGCCCACAGTCGCCTCTACACATTCCACTGGCTGTGTTCGCTGCTCGAGTCCTCTACCGTCATGAGTTAGTGGGGCATGTTTTGTGATTCATGCTTATCCTGTCACCATGTGACAtccatttatttgttcttgtgGGTGTGTATcattattaattgcattcatcAAATGCGCTTGATTGGATGGAAACATGCATGAGACAAGTGAAAGTTATTTCTGTTATGAAATTGAAAGAACACTTACAGTTGATTTCCTCTTTCCCCGAAGAACTTAATTTTCACAGCTTGAATGTAAAGCCAATGAGTTTTAGGGGTCATGTGAACAAACCTAGTCAGTCGGCAGAGATTAGGTCTAAATCCTGTGTATGTCTGTAAAATGAAGTTGTCCATTTTGTTAAACCGAAACCGAGCTCAATTGAAACACCTCAATTAGGTGGTGCGAAGAAATAAACTTGATAAAAATGATGCACAACAATTTTCCTCAtgttttacaatgcatttaaaaaaaaaaaaaaaggaccatCCGGATATTTACTTACATTTGAGTATTGTCAATTGTTTGGGAAGACGTTTATTTTTGAATCCTCTGTTTACACAGCTTGGATGTTAAAGCGTTTTCAATACATTTGCCATTCTTGCTGATtgtctgtgcatttttttgtcagaagtgaaaaataaagtttGCAAAGCCTA

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103059 lncRNA downstream 36851 12518286 ~ 12582425 (-) False lrch1
TU102976 lncRNA downstream 189929 12425515 ~ 12429347 (-) True G69631
TU102990 lncRNA downstream 207441 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 212514 12406167 ~ 12406762 (-) True G69644
TU102988 lncRNA downstream 214555 12404395 ~ 12404721 (-) True G69643
TU103090 lncRNA upstream 10777 12645836 ~ 12647002 (-) True G69704
TU103148 lncRNA upstream 95982 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 138382 12773441 ~ 12773852 (-) True G69738
XR_006251806.1 lncRNA upstream 152056 12787115 ~ 12789134 (-) True LOC122351847
TU103184 lncRNA upstream 400897 13035956 ~ 13037453 (-) True G69762
XM_043249278.1 mRNA downstream 65226 12518284 ~ 12554050 (-) True lrch1
XM_043249281.1 mRNA downstream 65284 12518284 ~ 12553992 (-) False lrch1
XM_043249280.1 mRNA downstream 65287 12518284 ~ 12553989 (-) False lrch1
XM_043249279.1 mRNA downstream 65296 12518284 ~ 12553980 (-) False lrch1
XM_043249282.1 mRNA downstream 65300 12518284 ~ 12553976 (-) False lrch1
XM_043248079.1 mRNA upstream 72917 12707976 ~ 12720690 (-) True LOC122351186
XM_043249565.1 mRNA upstream 88342 12723401 ~ 12729104 (-) True LOC122352069
XM_043248565.1 mRNA upstream 179094 12814153 ~ 12815138 (-) True LOC122351488
XM_043248427.1 mRNA upstream 479444 13114503 ~ 13118222 (-) False ftcdnl1
XM_043248426.1 mRNA upstream 479444 13114503 ~ 13118201 (-) False ftcdnl1
TU102995 other downstream 195830 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 429620 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 1119904 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1932649 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 2099819 10515272 ~ 10519457 (-) False fdx1
TU103144 other upstream 73572 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 102985 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 350065 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 838081 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 838081 13473140 ~ 13495645 (-) False gypc

Expression Profile