RNA id: XM_043249048.1


Basic Information

Item Value
RNA id XM_043249048.1
length 1615
RNA type mRNA
GC content 0.41
exon number 3
gene id hsd3b1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14604819 ~ 14607004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACTCTATCAGGAGATGTATGCGTTATTGCGGGAGCCTGTGGGTTTTTGGGAGAAAAGCTGGTCAGGCTGTTGCTGGAAGAGGAGAAGCTTGCTGAGATTAGATTGCTGGATAAAAACATCCAGTCTGAGCTAATACAGTCTCTTGATGGTTGCAAGGGAGAGACTAAAGTGAGTGTTTTTGAGGGAGATATCAGGGACCGTGAACTACTGAGAAGAGCCTGTAAAGGAGCAGCACTTGTTTTCCACACAGCATCTCTCATCGATGTCATTGGATTAATTGAATACAGTGAATTATATGGAGTTAATGTTAAAGGAACACAGCTGCTGCTCGAGACCTGCATCCAAGAAAACGTGTCCTCCTTCATTTACACTAGCAGCATTGAAGTGGCTGGTCCCAATCCCCGTGGTGATCCAGTCATTAACGGCAATGAGGACACTCCTTACTCCTCCTGTCTTAAGTTTAGCTACAGCAAAACCAAGCATGAGGCTGAGCAGATTTGCCTTCAGGCCAATGGAGAGCTGCTCTGTAATGGAGGTCAGCTGGCAACCTGTGCACTGAGGCCCATGTACATCTATGGACCAGGCTGTCGATTTACTTTAGGCCACATGCGGGATGGAATCCGCAATGGAAATGTGCTGGTGAGAACATCACGCCGTGAGGCCAAAGTGAATCCTGTATATGTGGGAAACGTAGCACTGGCACACATACAAGCAGGTCGAGCTCTCAAAGATTCTCAGAAAAGGGCTGTGATGGGTGGAAACTTCTATTATATCTCAGACGACACACCGCCTGTTAGCTACTCAGACTTTAATTATGCTATTCTTTCACCATTAGGCTTTAGGATACAAGAGAGGCCCATTCTGCCCTTCCCACTTCTATATCTACTGTCGTTCCTCATGGAATTACTGCACATTGTGCTCCGACCTATCCTGAGGTTCACCCCTCCCCTAAACAGACAGCTACTGACCATGCTAAACACATCCTTTAGTTTCTCATACCAAAAGGCACACAGGGATTTTGGATATAGCCCTCGCTATGACTGGGAAGAGGCACGTAGGTGCACTAGCGACTGGTTAGCATCTGTCTTACCCACAGAGAGGCAGCGGATtaacttgaaataaattaacagtatgtttaataatattgtgCTACCTGTATTTGTAAGCAGTCATGTTCTGTTTGATGTTTTATAGTCAAGTTAAACATAAACTTAGTAATTAGATCCATGGTAGTGGAAAACAATGGCTAATGTCCAATGTTTAGTGAATAATGCTtgttttatggtaaaaaaaaaaaaaattgctgaataTTGTTTATGCATATCACAAATAGAAATGACTATCCATAAAAGGAAGCAGTAATAAGTCATAATActtaatttcaattaaacaaTATGTTGTGGTAATTCAAAAGCCTACTTGTCTGTATTTTACTCGACTTGTCTGTTGTCATttagttatcttttttttactttttattcatttactgacAACAAGTCATTTTGAGGAAATGTGTAAGGTTTCATGAATATTTGATAAATGCTGTGAAAAGtttcaataaatgttattgtaacTTTATTTGtgatatccaaaataaaattgacAACAGATT

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K00070 HSD3B; 3beta-hydroxy-Delta5-steroid dehydrogenase / steroid Delta-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104140 lncRNA downstream 9477 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA downstream 9477 14594424 ~ 14595342 (-) False G70396
TU104132 lncRNA downstream 14544 14589858 ~ 14590275 (-) True G70393
TU104117 lncRNA downstream 41827 14477332 ~ 14562992 (-) True G70382
TU104075 lncRNA downstream 232145 14363039 ~ 14372674 (-) False LOC122351495
TU104213 lncRNA upstream 309796 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 309796 14916800 ~ 14918840 (-) True G70438
XR_006251854.1 lncRNA upstream 330120 14937124 ~ 14942863 (-) True LOC122352110
TU104296 lncRNA upstream 368408 14975412 ~ 14981853 (-) True G70494
TU104307 lncRNA upstream 406353 15013357 ~ 15273029 (-) False G70503
XM_043249033.1 mRNA downstream 2022 14595394 ~ 14602797 (-) False pla1a
XM_043249034.1 mRNA downstream 2022 14595394 ~ 14602797 (-) True pla1a
XM_043248415.1 mRNA downstream 18986 14579283 ~ 14585833 (-) False hcn5
XM_043248414.1 mRNA downstream 18986 14579283 ~ 14585833 (-) True hcn5
XM_043249443.1 mRNA downstream 26547 14574795 ~ 14578272 (-) True ska3
XM_043249047.1 mRNA upstream 1079 14608083 ~ 14613939 (-) False si:rp71-68n21.9
XM_043249046.1 mRNA upstream 1079 14608083 ~ 14613939 (-) True si:rp71-68n21.9
XM_043249049.1 mRNA upstream 7722 14614726 ~ 14620909 (-) False hao2
XM_043249050.1 mRNA upstream 7722 14614726 ~ 14619051 (-) False hao2
XM_043249052.1 mRNA upstream 7722 14614726 ~ 14619044 (-) True hao2
TU104031 other downstream 351043 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 664951 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 791492 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1109174 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 696099 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 782845 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1164417 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2210136 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2210136 16817140 ~ 16823775 (-) True G70986

Expression Profile