RNA id: XM_043249565.1


Basic Information

Item Value
RNA id XM_043249565.1
length 2183
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122352069
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12723401 ~ 12729104 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTCTATGCATGTCAGCAAGGCCACACGCCTTTATTCACTCACCGGGACCATTTGGATGATCCAGTTTTTCTAATGATAGTTCAGTCATGTCGGCACCTGCCATGGGGACCAGCAAAACAGCGCACAGTGATTCCAGTAACAAGAAGAAAAAGGGACCCGGAACGCTGGCCACCGCATATCTGGTCATTTACAACGTGGTTATGACAGCGGGatGGCTGGTCATTGCTGTTGGACTGGTTCGAGCATACCTTGCCAGGGGAAGTTACCATGGTCTTTATTACTCGATAGAGAAGCCCCTAAAATTCTTTCAGACTGGTGCCCTTCTTGAGATATTGCATTGTGCCGTGGGAATTGTTCCCTCCTCTGTGGTCCTGACTGGGTTTCAAGTGATGTCTCGAGTATTCCTTACCTGGGCAGTGACACACAGCGTTAGAGAAGTCCAAAGCGAAGACAGCGTTCTCCTCTTTGTGGTGGCCTGGACAGTCACGGAAATCATCCGTTACTCTTTCTACACCTTCAGCCTGCTCAACCATCTGCCTTACCTCATCAAATGGGCAAGGTACACGTTTTTTATTGTGCTGTACCCCATGGGAGTGGCAggggaacttctgaccatctaCGCCGCGTTGCCATACGTGCAGAAAACAGGGCTCTACTCCATCACCTTGCCTAACAAGTACAACTTCTCCTTCGACTACCACGccttcctcatcctcatcatgGTCTCCTATATCCCCTTATTCCCTCAGCTCTACTTCCACATGATGCGCCAGAGGAAGAAAGTTCTGGGTCACGTGGAGGAGTACAGCAAAGTGGAATAACTCGCTCCGCAGTTGACACACACAGCAGACTGATCGCACCGAAAACGGAAACAAGCGGATAACCTTTAAAAGCCAcactacagattttttttaaggcgTCTTGTCGATTAAACAGGCCAGATATGCAGAATGATTGTTAACGGTACTATTTTGGTCAAGAACTGTTGCGGTTGGCCGTTTTAGGGATTCTGTAACCAAACGAATGGCTTTTCCTCAGTTTAGAGGGAGAGGAATGAGGTTTCCATACTAATACATCAGCTtctgtgtaaaaacatttttatttttgattccaAATGTAGAATTACTGACCAAATATTGTAGCAAATATCACTCAGACAAAGGGCAAAAAAAACAGTTCGCTGCATCTGGTGGCTTTAACCAGAAAAAGTGTCTCATAATTTTCCTGTGTGGTGTGTTTTGTACACTGTATTTCCGACATTTAAATCTAATTGACTTAAATCTCTTGTTTCTCACTCAACTCATTCCTTTGCTTTATATTTGAGTATGATTTGTAACTCAAAACGTATGTGACTTTCACACTGCTTACTTGTCTACTGATTCACATCACGATTACTGttagtgttttctttttgttttgtgctgtgTTTCTTAAAGGATCAATGTTAATCGGTTGTTTTAATCAGTATTGGATATGCATTGTTGATTTGTGGCcgtttgcagaaaaaaaagaggtgtATCACCCAAAGAAATTGGCTGAGTTGCTAAGTCGGACCTCGTAGTCAATACTACTAATGTACTAGATGTGCATTTCTGTCGTAGAAGGAGATTGCAGATGACATTTTTGGAGCTTTTACGGCGGGAGATGTGGAAGTGTTTGGCCGTGAGAGACTCGCACGCCGAGCAGAAGAGAGCACAAGCCTCGGCTAACAGGGGGCCAATTGGATTTGAGTGCCTCCAGTCATGCTTTTCCAATGAGTCAAATCTAATAATGTGGAGGGAAAGCTGGGAGTCAAGACTAACTTAACGCTTCGTTGCCCGTCCACCTAATTGTGAACAGTCAACTTCATCCCTCCCAATGCAAACGAATCTCTCTCGTATTGAAGTGTGAGCCACACTATTACACAGATAGAGTCTTTGCAAACAAAGTGGTAAGCCTGTTCTCCTTATCAAGCCTATTCATGAAAAGATTAGCATGGGATGAATGGAGCGCAACTTTGAATAACACTGCATGTGAAAGTGGTGTGGCTAAACCTCGGTTAGTAGAAGCATGACCctaaactcaaataaaaatgctgacATTGTCAAGATTTTGATATTCAAGTTCTGCATGGGACCAGGCAACTTTGTATGAATagttatatgatatatatttacaataaaccaTAACATGGGAAGCAA

Function

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103090 lncRNA downstream 76399 12645836 ~ 12647002 (-) True G69704
TU103059 lncRNA downstream 140976 12518286 ~ 12582425 (-) False lrch1
TU102976 lncRNA downstream 294054 12425515 ~ 12429347 (-) True G69631
TU102990 lncRNA downstream 311566 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 316639 12406167 ~ 12406762 (-) True G69644
TU103148 lncRNA upstream 1937 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 44337 12773441 ~ 12773852 (-) True G69738
XR_006251806.1 lncRNA upstream 58011 12787115 ~ 12789134 (-) True LOC122351847
TU103184 lncRNA upstream 306852 13035956 ~ 13037453 (-) True G69762
XR_006251825.1 lncRNA upstream 499050 13228154 ~ 13232210 (-) True LOC122351987
XM_043248079.1 mRNA downstream 2711 12707976 ~ 12720690 (-) True LOC122351186
XM_043248929.1 mRNA downstream 82533 12619276 ~ 12640868 (-) False slc39a10
XM_043248931.1 mRNA downstream 82543 12619276 ~ 12640858 (-) False slc39a10
XM_043248932.1 mRNA downstream 88342 12619276 ~ 12635059 (-) False slc39a10
XM_043248930.1 mRNA downstream 92280 12619276 ~ 12631121 (-) True slc39a10
XM_043248565.1 mRNA upstream 85049 12814153 ~ 12815138 (-) True LOC122351488
XM_043248427.1 mRNA upstream 385399 13114503 ~ 13118222 (-) False ftcdnl1
XM_043248426.1 mRNA upstream 385399 13114503 ~ 13118201 (-) False ftcdnl1
XM_043248425.1 mRNA upstream 385399 13114503 ~ 13117732 (-) True ftcdnl1
XM_043248428.1 mRNA upstream 385399 13114503 ~ 13117723 (-) False ftcdnl1
TU103144 other downstream 11577 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 299955 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 533745 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 1224029 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 2036774 10680158 ~ 10686627 (-) False mrasa
XR_006251867.1 other upstream 8940 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 256020 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 744036 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 744036 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 1078718 13807822 ~ 13813327 (-) True G70261

Expression Profile