RNA id: XM_043249684.1


Basic Information

Item Value
RNA id XM_043249684.1
length 2673
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122352140
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17117017 ~ 17131427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCATTTTTGTTGTTATCAAATACATACTGACTGGCCCTGCCTTATGTCTCGGACAGTAATTTACTGTAGTGAAGATGTCCTTGTAAATACTACCTTTACGAACTTTTATACTGTTAGGCCACCTGTAGTACGTTGTAGCGGACTGTTTTCTTCGGCAGAAGCTTACGGGATACAGGTCTCGTCTTAGCTCGGTTTCTCTGCAGACACGCAGCCCTTCCCAGAGGGGGAGAACTGCTCCGCAGCCCAGACGGAATCGAGTGCTGCTCAAAGATTTATCCTCATCTTTTGAATCAACGCTCTCTTTTCCCCTTCGCTCCCTACCTTGACATCTCCGTCCTCTCTGTGGCAATGACAAGAGATTGAGACCTCTTCATTGACCAGTAACTGGGAGAGGAGCTTAACATGAACAGCTGGAGTGTGTATCACCTGGTAGCCCTTTCCTTGCTCTTTGTTCCTGAGTCTAGTGCTGAGTATAATAAAAATGAGTCACCGGAAAGGCGTCAATCCAGGGCCAGCAAGAATGCTGTGAAGAGAGGAGGCATGGAGAACCACGGAGAAcaatataacaGTGCAATATTAGATGTTGACCCGGACcagattgtttttaatattagtaattCACCACATGGTATTATTGTAAGATGGAGGACCCCTGATAATATAATATCACCATATTGTTATGACGCTGAAGTGCAGTACAAGAGCCAGTGTGTCAAAGACTGGAAGGGAGGTCAGAGTATTCAAGTGAGACATCAACACAAGGTGTACAATTTGGACCTGTCCAGTCTCAGCATGAAAACAAATTACGATTTCAGAATAAGAATGAAGATCTGGTGTATAAACAGCAACTGGAGCAAGTGGACCAAAGTGGAAAGTTGGGAAAACAATGAAGGTGTTTGTATGGTAGAAGCATCCACCTACATTTGGGTTTACATTTTGATAATTGTGCTGCCACTAACCACATTTCTTCTAGTCTGTCTCGTGACTCAACAGGGAGTTAGAAGACTGATCTTTCCTGAAGTACCAGATCCCAAacacttcaaaaataaaatcatggaCACTGAACAGTTTCAGTGGTATGGAAACCTTACACATTGGAATGAGGAGTGCTCAACAACAGATATTGAGATCATTTACAAGGGTGAAATTGAAGAGCAACATCAAACTTTGGTAACTGAGCCCATGCACACCCTCCCAGAGCAACATGACAGCACATACCCCATCTACTCCTCTGAAACACCTTGTGAAATCACAGAACTACCGTACTCTCAAAGTGTGATGGGATATATTGCCCTTTAAGACCACAGAGAGGGGCTGATATCATACCCATGAGCCAATTTAAGTCTTTTATAACACATGGGCTAAAACCTTCTCTGCTCGCTAGTGTCTCAGGTTTGTGATCATCATTGTGTGGATGCTTAGCATGGCTCTgttagcccctgctggtagaaTCTGTAACTACACCATCTGGATACAAAAAGCATCTTTCTCCATTAATGGGCATTCAAAATTAGCCACCTATTCTGATGCAACTTAAGTCTTTTACGCAACGTATTTCCAGTGCTCCGGAGTAAGCCAAACAAGTGCCTTTGAGATGAATAGAAAAGATACCTGATATATTTCTCTAGGTATTATCGTTCTCATTGGTTGATCCTAAGGTCTGTGATCAGGATTGTGGTTAAAGCAGGCTAGTGCACAACAAAAATCATTTGAGCACATCAGCTTGTAACAAACAATGTGAGTGCAGTACAATAATTGGACAATGGAGGGCACTCTGACTATCCTAAAGTGTTAAAGAAGAGTTGAGCCATATCAAAGCCAACAAGGAACACACTCTTCACAGCATCACATCCCTCTCTTAAGGGAGGATGTACGTTAATTTGAAGACtgatttaaaagattaatgTGAAACTGCATAATAGATGTGGAGTTTCAGTGTGACGGCGTAACAAAGCCAGGGCAGCAGCCACACACTCAGATCTGTTGTGATTGATGAACTGGAATGGGGGTAAAGAAGAATATAAGCAAACAATCATTAAGAGATAGAAGCAAAAATGAACACCACACAGGTGGATTCACAAAggtaaaaatgtacagtttcaGTCATACCTGTTGCAGTTTAGGAACACTGAccaggcagtttttttttttttttgtatggtaATAGGATTGGCTTCAGAAGTGCGGTCCAAAACAGTGAGACCACACTGAATATTTTCCTACATTTAAACCTGAAAATGTAcaggggaaaaacaaaaaagattgtaagaaataaaatgcaacatgtactaaaattttaatatgtaatatagttatatattccAGTGTACtttttgtcatgcatttttttttcatttaaatagttttattaatcatATATTTGGTAAATATGCAATTAGAAAAAGGTAAAggcatttttacacaaagtttCAGGACCCGTTCTGTGaattctgaaaatgaaatgcattctgtctttttattttgcaaatcaatTTCCCAcctattacatttaaattatttttatgttttgtcgatttctttgcttaaaaattaatgtattttttttactttactggATTGAATAAGAGCTTCATCTTTATGTCCACCAGTGGTGTATTGCTAACTGTCTTTGATACTCAAAACCATTTCTATGGGGAGGATGTGATTAAA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105081 lncRNA downstream 197703 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 227588 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 249495 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 250595 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 251428 16865278 ~ 16865589 (-) True G71005
TU105257 lncRNA upstream 81449 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 207693 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 209118 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 212289 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 232760 17364187 ~ 17368255 (-) False ncam2
XM_043248949.1 mRNA downstream 162668 16938284 ~ 16954349 (-) False ppp2r3b
XM_043248948.1 mRNA downstream 162668 16938284 ~ 16954349 (-) True ppp2r3b
XM_043248952.1 mRNA downstream 162668 16939000 ~ 16954349 (-) False ppp2r3b
XM_043248951.1 mRNA downstream 162668 16939000 ~ 16954349 (-) False ppp2r3b
XM_043248950.1 mRNA downstream 162668 16939142 ~ 16954349 (-) False ppp2r3b
XM_043249683.1 mRNA upstream 1043 17132470 ~ 17136795 (-) True slc25a6
XM_043249695.1 mRNA upstream 5714 17137141 ~ 17143357 (-) True asmtl
XM_043248286.1 mRNA upstream 13429 17144856 ~ 17151079 (-) True p2ry8
XM_043248289.1 mRNA upstream 13429 17144856 ~ 17150951 (-) False p2ry8
XM_043248287.1 mRNA upstream 13429 17144856 ~ 17150710 (-) False p2ry8
TU104984 other downstream 293242 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 293323 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1345153 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1717580 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1811042 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 104445 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1438328 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2589071 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2664830 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2750397 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile