RNA id: unassigned_transcript_1415


Basic Information

Item Value
RNA id unassigned_transcript_1415
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_85
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5439707 ~ 5439778 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcagagtggcgcagcggaagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 47328 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 98418 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 126147 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 142702 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 338043 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 27763 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 307077 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 314242 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 326561 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 326561 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 48521 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 48521 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 53438 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 63927 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 83782 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 189344 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 377067 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 523106 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 544111 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1414 other upstream 195 5439440 ~ 5439512 (+) True trnar-ccu_43
unassigned_transcript_1413 other upstream 416 5439220 ~ 5439291 (+) True trnam-cau_84
unassigned_transcript_1412 other upstream 615 5439021 ~ 5439092 (+) True trnam-cau_83
unassigned_transcript_1411 other upstream 881 5438754 ~ 5438826 (+) True trnar-ccu_42
unassigned_transcript_1410 other upstream 1102 5438534 ~ 5438605 (+) True trnam-cau_82
unassigned_transcript_1416 other downstream 419 5440197 ~ 5440268 (+) True trnam-cau_86
unassigned_transcript_1417 other downstream 616 5440394 ~ 5440465 (+) True trnam-cau_87
unassigned_transcript_1418 other downstream 813 5440591 ~ 5440662 (+) True trnam-cau_88
unassigned_transcript_1419 other downstream 1011 5440789 ~ 5440860 (+) True trnam-cau_89
unassigned_transcript_1420 other downstream 1230 5441008 ~ 5441080 (+) True trnar-ccu_44