RNA id: TU1059



Basic Information


Item Value
RNA id TU1059
length 301
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G692
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3066811 ~ 3070069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGGGAACGGAGTTTACACTAGATGACACCTTCATGTGCACTGATCATCCAGTTCAAGTTGATGTGGAGTCTGTCAGTGTCAAAGAGCATCCATGCCAGGAGTCAGAATCAGAACAGAGGTGGATGCTAGTGCCGTTGGAGCTGGTGCTGTGCTCTTACAGGAAGATAAAGAAGgtttcttTATTGGTTCGCCTGACCATCTGGGAGGATCTGGATGTCCAATCAGGAGCCGCGATGCAGAATTTAAATGGAATTGGTGTGCATGTTTCGGGAGGGCGGTGGAGTTGTGGCTAGCTTCACCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251760.1 lncRNA downstream 233080 2821188 ~ 2833731 (-) True LOC122351434
TU1043 lncRNA downstream 324383 2740227 ~ 2742428 (-) True G681
TU1015 lncRNA downstream 411979 2652717 ~ 2654832 (-) True G666
TU995 lncRNA downstream 502401 2562191 ~ 2564410 (-) True G652
TU997 lncRNA downstream 504845 2561355 ~ 2561966 (-) True G653
TU1063 lncRNA upstream 42201 3112270 ~ 3120797 (-) False G695
TU1062 lncRNA upstream 46261 3116330 ~ 3120797 (-) True G695
TU1085 lncRNA upstream 66441 3136510 ~ 3136954 (-) False gpc5a
TU1088 lncRNA upstream 215887 3285956 ~ 3286209 (-) True G720
TU1098 lncRNA upstream 271493 3341562 ~ 3341953 (-) True G730
XM_043235137.1 mRNA downstream 327222 2732846 ~ 2739589 (-) True cep97
XM_043235150.1 mRNA downstream 334453 2726297 ~ 2732358 (-) True nfkbiz
XM_043243767.1 mRNA downstream 342891 2720655 ~ 2723920 (-) True eed
XM_043249739.1 mRNA downstream 346668 2717987 ~ 2720143 (-) False hikeshi
XM_043251484.1 mRNA upstream 66439 3136508 ~ 3284780 (-) True gpc5a
XM_043251495.1 mRNA upstream 132483 3202552 ~ 3284786 (-) False gpc5a
XM_043251462.1 mRNA upstream 625096 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA upstream 625096 3695165 ~ 3701245 (-) True LOC122353624
XM_043240772.1 mRNA upstream 1461720 4531789 ~ 4546466 (-) True ndfip2
TU999 other downstream 377347 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 1461827 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1937174 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 2438993 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2627683 439054 ~ 439128 (-) True trnag-gcc
TU1152 other upstream 937771 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1228241 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 2707502 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 2776007 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 3041394 6111463 ~ 6113523 (-) True G1270

Expression Profile