RNA id: TU108


Basic Information

Item Value
RNA id TU108
length 331
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G70
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 441879 ~ 442209 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttatttatatagcgcttttaacaacacaggttgcatcaaagcactgtacagtataatgacagggatgtataatgacgagagtgaccaatttcttattaaatgcagagacggtctctgtagtcaattcaacgatagtcactagaagttaagtgtccccaaccaagcaagccagaggcgacagcggcaaggaaacaaaaccccatgcatacagaatggagaaaaaaaaaaaccttgggagaaaccagactcagttggggtcagttctcctctgaccggacgcccagcacttaacttccagttcaattttaaacgcagctgtgtcaggtagtg

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104 lncRNA downstream 19470 422132 ~ 422409 (-) True G66
TU86 lncRNA downstream 48027 393299 ~ 393852 (-) True G56
TU81 lncRNA downstream 220551 218929 ~ 221328 (-) True G51
TU80 lncRNA downstream 220805 218579 ~ 221074 (-) True G50
TU46 lncRNA downstream 263678 177676 ~ 178201 (-) True G19
TU110 lncRNA upstream 5299 447508 ~ 447882 (-) True G72
TU111 lncRNA upstream 6119 448328 ~ 448640 (-) True G73
TU141 lncRNA upstream 281536 723745 ~ 724036 (-) True G99
TU158 lncRNA upstream 298861 741070 ~ 748364 (-) False LOC122342053
TU177 lncRNA upstream 448035 890244 ~ 890587 (-) True G125
XM_043249769.1 mRNA downstream 8201 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA downstream 8201 422900 ~ 433678 (-) True lztfl1
XM_043241388.1 mRNA downstream 33793 404682 ~ 408086 (-) True ccr9b
XM_043247627.1 mRNA downstream 80276 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 236320 193211 ~ 205559 (-) True prpf4bb
XM_043235838.1 mRNA upstream 295928 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 324017 766226 ~ 826226 (-) True LOC122342059
XM_043235714.1 mRNA upstream 608537 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA upstream 608537 1050746 ~ 1116426 (-) False farp1
XM_043239696.1 mRNA upstream 675632 1117841 ~ 1137065 (-) True kpnb3
unassigned_transcript_1 other downstream 2751 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 5754 435808 ~ 436125 (-) True G67
TU47 other downstream 254794 186420 ~ 187085 (-) True G20
XR_006252043.1 other upstream 185491 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 687290 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1152549 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 2246556 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 3565631 4007840 ~ 4014287 (-) True G782

Expression Profile