RNA id: XM_043251484.1


Basic Information

Item Value
RNA id XM_043251484.1
length 5267
RNA type mRNA
GC content 0.47
exon number 8
gene id gpc5a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3136508 ~ 3284786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCCACATCGGAAAACGTTGCGACACTATACAGCCTAGGTTACGTTCCTAAAAATCTGGATATTGTGTGTCAGTTCGCCTCGTCAGCCTTGTAGTGTTTCAGGAGCTCTTCTCGTGGCAGTCTAACGCTACCGATTCCGCCCATCCTCTCTTGACAGCTCCTTCTTTCAGCGACGCGCTCATTGCGCTCTTTTTGAAGGTCCTGCGCGAAACCCTTCCCAGGCGCGCGACCTCTCCAATATCATTTTCTTCACCTGAACTCGCTGCCGTTTTCGAGTTTTCTGAGATACGACACCGCCGTTATTCtatttggtttttattattactcgAACGGATAAACGCTTGTGAATATGGGCGTGCGTGGAGTTTTGGTTTATGCCTTTCTTGCGGTTCTCGTCGATCCGTGTCGGGGGACTTTAACGAACTGCGACGAAGTGCGTAAAGTTTTTCAGCTGAAGGAAATCGGACCTGCGAAGTCGATACCCGAAACACCGAGAACAGGTTCAGACCTTCAGGTTTGTATGTCAAAGAACGTAACGTGCTGCACCAAGAAGATGGAGGAGCGTTACCAGGTGGCTGCTCGACGGGACATCCAGAACCTCCTCCAGATATCCAGCTCTAGTCTGAAGTTCCTCATCTCACGCAACGTGGCTGCTTTTCAAGAAACCGTGGACTCGTTGGTGCGGCAGGCGGAGAACCACACTCAGGCCGTGCTCCTGCACACGTACCGTGATCTGGCCGGACCGGCGGCGGCTCCCGTCGGGGAGTTTTTCACAGACGTGGGTCTCTTCGTCTTGGGCTCTGAGCTGAGTCTGGAGGAAGCTTCTCAGCGCTTCTTCGACGCCCTGTTCCCCGCGGTTTACGAGCGGCTGGTGGAGCCGGGTCTGTCTCGCTTGTCCCAGCCGTACTCCGAGTGCGTCCGCTCCTCGTGCCGGGATCTGGGTCCATACGGCGGAGCTCCTGGCCGGCTCGCCGCTCTTATCTCCCGCGCCTCGCTGCCCGGCCGGGTGTTCCTCCAGGCGCTGCACTTGGGCGTGGAGGTCATCAACACGACCGACCACATCCAGCTCAGCCGCGAGTGCAGACGCGGCCTGCTGAGGATGAGCTACTGCCCGCACTGCCAGGGTCTGACCTCCAGCAAGCCCTGCATGGGCTACTGCCTCAACGTGGTGCGAGGGTGTCTCGCCAGCCTGGCCGGAGTGGACGCCCACTGGAGGGAGTTTGTCCGCTCGCTAGAGACGCTCTCTGCCCGCATGCACGGGGCGCAGGACCTGGAGCACGTGCTTCTGGATGTTCACGGGCTGGTGAGGGACGCCGTGGCCCACGCTCAGAGGAACGCACCTCGCCTTTCCGTGCAGgtgcgGAGGATGTGCGGTCACCCGATCAGACAGCAGACGGAGCAGGCGAGCAGCGGTCAGCACGGCAGCGCCGGACGAGACTCCATTCCCCTGAAAGGAGCGgtcagaaacacagaagacactCTTGGCAGCAGGAGAAAagagtTCCTCAGCAGTCTGCGTCTCTACCGGGCTTTCTACGGGGGTCTGGCCGATCAGCTGTGTGTGAGCGAGCTGGCGTCCGGAGACGGGACGGCCTGCTGGAACGGGGCTGGTTTGGCCAGctACACTCTCCGAGTGGTTGGCAATGGCATTAAAGCCCAGGCTGAAAACCCAGAAGTCAAAGTGAAGGAGGCCGACCCGGTGATCAGTCAAGTCATTGATAAACTGAAGCACATCAATCAGCTGTTGCAGGGCAAGTCAATCCCAAAGCTGGGCACACTGGACCAAATCGAAACCGGGAGTGGAGACGGATACAGTGGAGACTGCGATGATGAGGACGGATGCTGGGGATCAGGGAATGGAGCGGCCGAGAGGAGAAGAATAGAAACTATATTGACACCGGAAAATACCAACAATCACAGATACCATCACCCACAAAGCAAAGGCTTTGATCAGATGAATTCTGGCTCGAGAGGAACACATACCGCCCCGTTGGCTCTGGTCTCGATATGTGCGTTTGCGCTGTTGTCAGGGTAACGGCAGCCAACTGGGTCCAAGCCCCAGCCTCAAGACTGCTTTTCACACTGTTTcttagaaagaaaagaaaatgtgccAGCTTTTAAAACGTCGAGGGTGAAATTCCGGCGAGGTGATGGAAACGGATTGCAAAAATTGATGCATTGAGAACCGAAGATGAACTGAGAGCGGAAAAACTGTCCTTTCATAAACCTTTTTAATCACGTAACAGGCTACTAAATACTCTGCCAACACTTTACTGCCTTGAATGCTGTCTTTTTTACAGGGTTCAGAGTAATACATTCAgagaaaatgaattaatttaattctttaattgtGTATATTCAAAAAATAGTTGTGAGCTGAAATGAGCACTGCACGTatcagcattttgttttttgttttttttaatagaaatgatgCAATATTTTTGATGTCACATACTGCTTTATGAATACGTCTCGGTACCATGTACCTAAATGAcctctttttttcagcattttttaatgtactgttgttgtttcttttcatCTGAAATGGCGTACGACGCACCTTAACAAAGTGTATAAAGATGTGTTgatttacaatgtatttattcttGGTTACAGAGTCGCATTAAACAGATTATGAAACTAAACATCAGTTAAATGCggcaaaatatgcatttctttaatacagcaacattttacagtaaggTTTCATTTTTTAGCATTggtaaacatgaactaaaagtttaatttttacaatagtCCTATAATTTTTCTTTCCCTCAGAAATTCTGTATTGGATATAAACAactttttattgcacaaaacattttatttatctcaCTATTAATGAAAATCAATGAATGACATTTAATGTTAGAGTTAAAAGCACTGAAGATAtgactttttaacttttattttgacggttGCCTTGAATATCTTTACATTGCTGTGTGTATATGATACGAGGACAGTGTTTTTCAAAGGAAACTGTCAAATGCTCACGAAGTGATGCTCGGAGCAGCTGTGGAGATGTATTTATGTCATCATAACGATTCGATTTTAGTACAGTTGTACACAAAACCGTGCATCTGCGCCATTCATTAACAGAGACACAtggaatttatatttaattagactttttgcggcttaatatttacaaataagagTGGCACTGTGcttacttttgtgtgtgtgctggttgtTGTGGTTATGGAGACACAAATTTACTGACACGGGTATGATggaggtattacaatttgaaggtggtttatgagaaCACTGCCAATGTTCCCataatttaaatggtttaaaaacacactgatgGGTGTGTGGGAGCCCATGCGTACCTTCAACAAGAAACTGCTTTAAATCGCTATTATTTGTCATACAGCTTGGCAATAACAACGGGGAAGTGAGTCTTCTGGAGAAGGACTCTACGGAAGCCACATCCTGCCCAAAGGGAGGTAACATGTGAAGACACTAATGTGGACTTGCCCAGGCCTGGGGCAGTGCAACATATGAATTGGTGTCTGATGCTGGATCTACCCAAGAAACAGGAGGAATGACTGAGAGCACAGACAGACAAAGTAGTCTCTCAAATGGTGGAAAATACACATACACCTGGCCCGGTACAAGTAACACTGAAACCGGGACTTGCCGAGTCTGACTGCCAAGGGTGCTGGAGGATGCTCAACCAGAGTCCACCGTATGGGAAACTCAATTGGTAGAAAACACTGCACCCGCATCCTTGGGTGAGGGGGAATGGTGCAGCAACTGAGACACTGGCCAGTCCTTCCCGGCAATTACCTGTTACCCAACAAATGGGAAGAGACTGGCTCAATGTGGAGATTTTAGTACCTCGCAAAGGTGTTCGGTGGAAGGCGTGGTAGAAGGCTTGGACACGTATCCAGGCCGGGGGCTCAAGACAACATGAGAGTATGCCGGTCCAAACACAAAGCACTCTTCGCTACCAAAAATGCTTAGAGGTCCCCGACCATCTTGATGAAAGTGTCTTTAGTCTTTTAGAAGACAGGAATTTAGCTTGACGGAATCCAGCAGCCCAAAGGGACCTCTCTGAGGGCCAGTCAGGACAACAGAGAGATCGCAGGAGGGCACCAGGGGTGACCTGGGAGGATTTCACCTTCTGAAACCCATCAGGAACCTCACAATGAGATTGTGCTTTCCCAAGAACCGGCTATCTACTGCATCGCAATGCGCTACGATAGCAGTCACATACACTTTCAACCTTCAACCTTTCTTGCAGGAAGGAAAGTATTACTCCAATCACACAACTTTAAGGGTCTTCTTTAAAAGAAGAACACCAATTCGTGAACAGACTCCATTTCATTGAAACAGGCATGCCTGGCCTGAGTAATAGTCTCTACCACCTTCAGTGGCAGAACACTTAGGTCTGCCGCATCTTGTCCAGGAGCCACATGTGGAGCTTCGTATTCCAGCTTTTGAGGAATTTCGCCTGCTTCGCCTTCAATCACTTGGCTCTGAAGCAAAAACCTAATGAGTGGTTGCTGTCGCCTATTTATATCCGCATGACGGAGAGTGGCTCGggaagcaaataaaaacagccaaatttcattgccattttctcttaatcagCAAGACTCCAGTGTGTCATTACGGCGTAACTCGTAGTGACTGACTGATAAGGAACCGCAGAAACGCTGAAAATGTGAGAATTGTAAGatacatgtttatttcatggcagaaacaaaaatgtgcaGTTGTGAATTTCAAATTGGGAATTGTAAGATGTAAACTTGAAAGTGCAAGGGGATCTCACATCTTACAGTTCTTACATAGTTTttgtctcacaattctgagtttatgtcCTGAAATTCTGGGTTTATAActcaaaattctaaaattatgtCTTGCCTTTCAGAGATTCTAACTAGCAATTCTAAGTTTGTCTCACAATTCTTAGTTCAAAACTCACAATTTAAAATTGATGTCCTGGTTTATAACTCTGTTATAAAATTCTTTTTATGTCTTGCAATTCTGAATTTGTCTCAAATTTCTGAATTCATAACTCACCACTCAGATTTTATCTTGCAATTCTAAAATTACGTCTCGCAATTGTGAGTTTATGCAGTATCTTGCAGTTGTGAGTTTACTGTTTTCTGGTTCTACTGGTTGTGTTATAAATTCATGCTCTTTTTCAACACCGCTAATAGCAGTATATTTGAACCAAAGGCATGCCTATCAAGTCCTGCTCATTATATTGTACATTGAATATCAGAAATA

Function

GO: NA

KEGG:

id description
K08111 GPC5; glypican 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063 lncRNA downstream 15711 3112270 ~ 3120797 (-) False G695
TU1062 lncRNA downstream 15711 3116330 ~ 3120797 (-) True G695
TU1059 lncRNA downstream 66439 3066811 ~ 3070069 (-) True G692
XR_006251760.1 lncRNA downstream 302777 2821188 ~ 2833731 (-) True LOC122351434
TU1043 lncRNA downstream 394080 2740227 ~ 2742428 (-) True G681
TU1088 lncRNA upstream 1176 3285956 ~ 3286209 (-) True G720
TU1098 lncRNA upstream 56782 3341562 ~ 3341953 (-) True G730
TU1100 lncRNA upstream 58311 3343091 ~ 3343493 (-) True G732
TU1162 lncRNA upstream 737587 4022367 ~ 4024242 (-) True G792
TU1164 lncRNA upstream 739926 4024706 ~ 4026047 (-) True G794
XM_043235137.1 mRNA downstream 396919 2732846 ~ 2739589 (-) True cep97
XM_043235150.1 mRNA downstream 404150 2726297 ~ 2732358 (-) True nfkbiz
XM_043243767.1 mRNA downstream 412588 2720655 ~ 2723920 (-) True eed
XM_043249739.1 mRNA downstream 416365 2717987 ~ 2720143 (-) False hikeshi
XM_043249749.1 mRNA downstream 416365 2717987 ~ 2720143 (-) True hikeshi
XM_043251462.1 mRNA upstream 410385 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA upstream 410385 3695165 ~ 3701245 (-) True LOC122353624
XM_043240772.1 mRNA upstream 1247009 4531789 ~ 4546466 (-) True ndfip2
XM_043240711.1 mRNA upstream 1285054 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 1285054 4569834 ~ 4574420 (-) True mnx2b
TU999 other downstream 447044 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 1531524 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 2006871 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 2508690 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2697380 439054 ~ 439128 (-) True trnag-gcc
TU1152 other upstream 723060 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1013530 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 2492791 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 2561296 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 2826683 6111463 ~ 6113523 (-) True G1270

Expression Profile