RNA id: TU1087


Basic Information

Item Value
RNA id TU1087
length 254
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G719
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3285949 ~ 3286202 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCTCttgatcttttattaaaaactttgcATTTTAGAAGTTACAGttgattacaataaaatatatttcacaaattcagcattaaatacaaaaaaattggggaacttcacaaaaaaaaaaaccctacttgTTGGGTACAATCTCCACAATCCTCTACAGGCCGGGACAAGTGCAATACCTTCCAAACACACAGCATTGCTACCAATCCCAACCTGTGCAGAAAGGGACCAAACGGCTCCAGAAGCGGCTCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796 lncRNA upstream 555229 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 565026 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 658545 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 679872 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 696941 2588687 ~ 2589008 (+) True G518
TU1141 lncRNA downstream 434062 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 733895 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 923207 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 933040 4219242 ~ 4221288 (+) True LOC122346159
TU1185 lncRNA downstream 1007851 4294053 ~ 4299198 (+) True G815
XM_043246568.1 mRNA upstream 165129 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 165129 2941770 ~ 3120820 (+) False LOC122350229
XM_043224891.1 mRNA upstream 503765 2758083 ~ 2782184 (+) True LOC122328837
XM_043235163.1 mRNA upstream 543538 2739677 ~ 2742411 (+) True rpl24
XM_043240364.1 mRNA upstream 585725 2691742 ~ 2700224 (+) True tmem39a
XM_043251222.1 mRNA downstream 518397 3804599 ~ 3817996 (+) True slitrk6
XM_043249780.1 mRNA downstream 721573 4007775 ~ 4011370 (+) True LOC122352357
XM_043236152.1 mRNA downstream 935081 4221283 ~ 4232503 (+) True LOC122342374
XM_043240733.1 mRNA downstream 1208992 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 1262250 4548452 ~ 4554686 (+) True tuba8l2
XR_006252051.1 other upstream 543737 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 689647 2594931 ~ 2596302 (+) True G482
TU696 other upstream 758705 2524525 ~ 2527244 (+) True G474
TU718 other upstream 772090 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 799961 2483673 ~ 2485988 (+) False grtp1a
TU1095 other downstream 48456 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 350505 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1070496 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1071805 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 1651981 4938183 ~ 4944841 (+) True prkag3a

Expression Profile