RNA id: TU110


Basic Information

Item Value
RNA id TU110
length 375
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G72
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 447508 ~ 447882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGGCAGTTCAtggtaaatgtttattaatcaatattaaaaagaataagtACCTGGTTTCTTTTCTTCGTTTTTCTTTATCAGTTCCCTGATAAAGCTATCTTTCTTTACCAACTCTTCTTGGAGGAACTGTTTATCAGTTTTCAGAATCGCAATGGTTTCATCTCTCAGGtcccctttttctttttcagcttgAAGCTGTATTTTAAGTGTTGCAAGCTCATGTGTGTAAGTTGGAGCAGGTGTGTctgaaaattgacaaaaatgttacaCACCATACAGCTGTTAGTTCTGGCCCTTTAATTAGATTGGCCAAACATTAATTCCAGAATGCAGATATTACATCAATGAAATGATtcagtttaatacatttgcC

Function

GO:

id name namespace
GO:0009410 response to xenobiotic stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108 lncRNA downstream 5299 441879 ~ 442209 (-) True G70
TU104 lncRNA downstream 25099 422132 ~ 422409 (-) True G66
TU86 lncRNA downstream 53656 393299 ~ 393852 (-) True G56
TU81 lncRNA downstream 226180 218929 ~ 221328 (-) True G51
TU80 lncRNA downstream 226434 218579 ~ 221074 (-) True G50
TU111 lncRNA upstream 446 448328 ~ 448640 (-) True G73
TU141 lncRNA upstream 275863 723745 ~ 724036 (-) True G99
TU158 lncRNA upstream 293188 741070 ~ 748364 (-) False LOC122342053
TU177 lncRNA upstream 442362 890244 ~ 890587 (-) True G125
TU328 lncRNA upstream 525864 973746 ~ 973969 (-) True G231
XM_043249769.1 mRNA downstream 13830 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA downstream 13830 422900 ~ 433678 (-) True lztfl1
XM_043241388.1 mRNA downstream 39422 404682 ~ 408086 (-) True ccr9b
XM_043247627.1 mRNA downstream 85905 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 241949 193211 ~ 205559 (-) True prpf4bb
XM_043235838.1 mRNA upstream 290255 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 318344 766226 ~ 826226 (-) True LOC122342059
XM_043235714.1 mRNA upstream 602864 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA upstream 602864 1050746 ~ 1116426 (-) False farp1
XM_043239696.1 mRNA upstream 669959 1117841 ~ 1137065 (-) True kpnb3
unassigned_transcript_1 other downstream 8380 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 11383 435808 ~ 436125 (-) True G67
TU47 other downstream 260423 186420 ~ 187085 (-) True G20
XR_006252043.1 other upstream 179818 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 681617 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1146876 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 2240883 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 3559958 4007840 ~ 4014287 (-) True G782

Expression Profile