RNA id: TU1164


Basic Information

Item Value
RNA id TU1164
length 1306
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G794
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4024706 ~ 4026047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttggaggcaATTCGACACTACAGACTTTACCGTGATACCCACCACCCCCAAAAAAAGTCCTCTCCTGTCCTCACTCGCCCACTCACCCTCTTTCTAAACTATGGAAGAATCAGGTTAACCTTTGCTGGCTTGTCTCTCCCACACATGCAGCAAGATTTCCAGGGTTTTCACATCAAGAGCTCTGGGCATTTGTTCAGCTTTTACAAGTTGAGGGACTTGCGTTGGACTTGGTGCAGCCTTTCAAACAATTTCTTACATCatgcaaacaaaccaaaaaaagacgACGGCAGGCGATGCGTTTTCACCCTTTTTTGCTCAACAAAACCCGTTAGGAGACGTTCtgaaggggggaaaaaaatggggTTAGAGTTTCAAGACTGAAGCTGTtctattgtgtattttgagggAGATTAATGGTCCTGTAAGGAGATAGGTTTTTGTGAAGCACTCTGCCCTAATGCCAGACCCATCCATTAAAGGATTATCATGGATAATCATTGCTCTATCTAAATCTATCCTGCTCGGGTCCATCGGGCCCGGGGTTCAACAAACAGTGATGGGGGAATGATTTCCATTAAAACATGATTCTGTCCCTCCAGTGCTGTTACTGTCATGGTTAATCATATACACAGCTCTGCCAAGTGCCGGTGGCATTGTGCCTTTTACCTGCGGGCCTGGAACATTTTCGCCGCCCACCTTGCCAGCCTCGACACCGATTTGTGATTGTATCGCCATGTTTCTCCCAACCGTATTTTACCTTCAGTGAAGCCGTATGGGCAACCGTGCATGTCCAGGTGACACCTTTCACCTCGAGATCAAAAGTACCgtaagaaatgtataaataacatttcgCTTTGCAAAAATGAAGCCTATATTTTCAGTGCCGGTTTAAGATGTTTggcattattttcattacaattaCGCGCATCCGCTCCCAAATTctcattattgtaatgcttccagacattttctttatgttcttattatcattattcTCAATGGTGATTCTCATTAGaatctcattactgtaatataatttggcttctttattatttaaattagcttaaagtagtttaaaaaaaggcacCATGATGTGTAAGTACTACAATTGATGTAATATCATTATCAAGATTACTCCGCATTACGGTAATGAGAATTGGGGTATAAAGAGTTTAATAGTCATGGAAATAATGCCCAGAAGTCCCAATAAGTCTATGCATAATCTATCATAgtatacaaaattaattttgcattttgattttgagGTAAACTTTTACGTTAGCATTTTCCTCCTTTCAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162 lncRNA downstream 464 4022367 ~ 4024242 (-) True G792
TU1100 lncRNA downstream 681213 3343091 ~ 3343493 (-) True G732
TU1098 lncRNA downstream 682753 3341562 ~ 3341953 (-) True G730
TU1088 lncRNA downstream 738497 3285956 ~ 3286209 (-) True G720
TU1085 lncRNA downstream 887752 3136510 ~ 3136954 (-) False gpc5a
TU1167 lncRNA upstream 58 4026105 ~ 4028108 (-) True G797
TU1173 lncRNA upstream 11691 4037738 ~ 4037970 (-) True G803
XR_006251102.1 lncRNA upstream 420012 4446059 ~ 4454180 (-) True LOC122346152
TU1280 lncRNA upstream 474510 4500557 ~ 4500788 (-) True G880
TU1283 lncRNA upstream 480231 4506278 ~ 4506559 (-) True G883
XM_043251462.1 mRNA downstream 323461 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA downstream 323461 3695165 ~ 3701245 (-) True LOC122353624
XM_043251495.1 mRNA downstream 739920 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 739926 3136508 ~ 3284780 (-) True gpc5a
XM_043235137.1 mRNA downstream 1285117 2732846 ~ 2739589 (-) True cep97
XM_043240772.1 mRNA upstream 505742 4531789 ~ 4546466 (-) True ndfip2
XM_043240711.1 mRNA upstream 543787 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 543787 4569834 ~ 4574420 (-) True mnx2b
XM_043240393.1 mRNA upstream 571033 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 571033 4597080 ~ 4618626 (-) False fn1b
TU1152 other downstream 10419 4007840 ~ 4014287 (-) True G782
TU999 other downstream 1335242 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2419722 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 2895069 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 3396888 627700 ~ 627818 (-) True LOC122353666
TU1193 other upstream 272263 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 1751524 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 1820029 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 2085416 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 2241616 6267663 ~ 6274751 (-) False si:ch211-14k19.8

Expression Profile