RNA id: TU1185


Basic Information

Item Value
RNA id TU1185
length 465
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G815
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4294053 ~ 4299198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtggcgaggcagaggaagcacaagagaaacaggtgcagtgaaaacccccggagggtgtatttattagacaatacacagaaggtgagcggtgagtccgtgcgaggagtgcggcggtgagtccgggggtggtgtagcggtgaatccggtgagtgcagcggtgagtcgtctcggtgtttcccgtgcttagtaacgtgagggagtccactgtgaggtagtaggggaagtagctcaggcaggcccgtcacgttgtagcttctgggagacaaagaaagagacaacaggttagcttgcgtttccggagtctcgtggctcactgaagccgtcgcctggccgggcttatctggcccgcggctgatgagctccaggtgtggcgaatccgtcgttgagtggctggtgtaggtgttccgtgtttgttcccagggcaacgctgatcgatcctcgggacgctcgtcacaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251103.1 lncRNA upstream 72765 4219242 ~ 4221288 (+) True LOC122346159
XR_006251095.1 lncRNA upstream 75453 4209409 ~ 4218600 (+) True LOC122346127
XR_006250463.1 lncRNA upstream 269715 4020097 ~ 4024338 (+) True LOC122341420
TU1141 lncRNA upstream 573514 3720264 ~ 3720539 (+) True G771
TU1087 lncRNA upstream 1007851 3285949 ~ 3286202 (+) True G719
TU1231 lncRNA downstream 203043 4502241 ~ 4502477 (+) True G856
TU1232 lncRNA downstream 204334 4503532 ~ 4503821 (+) True G857
TU1227 lncRNA downstream 241792 4540990 ~ 4542948 (+) True G852
TU1218 lncRNA downstream 276946 4576144 ~ 4599814 (+) True G843
TU1222 lncRNA downstream 309333 4608531 ~ 4609874 (+) True G847
XM_043236152.1 mRNA upstream 61550 4221283 ~ 4232503 (+) True LOC122342374
XM_043249780.1 mRNA upstream 282683 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 476057 3804599 ~ 3817996 (+) True slitrk6
XM_043246568.1 mRNA upstream 1173233 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 1173233 2941770 ~ 3120820 (+) False LOC122350229
XM_043240733.1 mRNA downstream 195996 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 249254 4548452 ~ 4554686 (+) True tuba8l2
XM_043240746.1 mRNA downstream 256307 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA downstream 256409 4555607 ~ 4561710 (+) True stk16
XM_043240557.1 mRNA downstream 290833 4590031 ~ 4597077 (+) True atic
TU1118 other upstream 594960 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 953177 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1551841 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 1697751 2594931 ~ 2596302 (+) True G482
TU696 other upstream 1766809 2524525 ~ 2527244 (+) True G474
TU1197 other downstream 57500 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 58809 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 638985 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 667988 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1580262 5879460 ~ 5881134 (+) True G1168

Expression Profile