RNA id: TU1193



Basic Information


Item Value
RNA id TU1193
length 678
RNA type TUCP
GC content 0.46
exon number 2
gene id G820
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4298310 ~ 4299193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atattgtgacgagcgtcccgaggatcgatcagcgttgccctgggaacaaacacggaacacctacaccagccactcaacgacggattcgccacacctggagctcatcagccgcgggccagataagcccggccaggcgacggcttcagtgagccacgagactccggaaacgcaagctaacctgttgtctctttctttgtctcccagaagctacaacgtgacgggcctgcctgagctacttcccctactacctcacagtggactccctcacgttactaagcacgggaaacaccgagacgactcaccgctgcactcaccggattcaccgctacaccacccccggactcaccgccgcactcctcgcacggactcaccgctcaccttctgtGCAAGCGCTCGCTtcccggcgaagatggaggaattcctccaacgcctctcagaggtttccattcgccagcaacagatcgtcgagcatttggctacccgccagaacgagaccgagcaggagctcgctgctctccgcgccgccactcaaccacgccccgtcgtgcctgatccccggatgcaagccacacagctgctacCCAAAATGGCCGCCAGCGATGACCCTGAAATATATCTCGAGATGTTCGAGAGCGTCGCAACCACGGAAGGATGGGACCGGAGGGATTGGGCACGCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1173 lncRNA downstream 260340 4037738 ~ 4037970 (-) True G803
TU1167 lncRNA downstream 270202 4026105 ~ 4028108 (-) True G797
TU1164 lncRNA downstream 272263 4024706 ~ 4026047 (-) True G794
TU1162 lncRNA downstream 274068 4022367 ~ 4024242 (-) True G792
TU1100 lncRNA downstream 954817 3343091 ~ 3343493 (-) True G732
XR_006251102.1 lncRNA upstream 146866 4446059 ~ 4454180 (-) True LOC122346152
TU1280 lncRNA upstream 201364 4500557 ~ 4500788 (-) True G880
TU1283 lncRNA upstream 207085 4506278 ~ 4506559 (-) True G883
TU1285 lncRNA upstream 211601 4510794 ~ 4511385 (-) True G885
TU1289 lncRNA upstream 252376 4551569 ~ 4553272 (-) True G888
XM_043251462.1 mRNA downstream 597065 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA downstream 597065 3695165 ~ 3701245 (-) True LOC122353624
XM_043251495.1 mRNA downstream 1013524 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 1013530 3136508 ~ 3284780 (-) True gpc5a
XM_043235137.1 mRNA downstream 1558721 2732846 ~ 2739589 (-) True cep97
XM_043240772.1 mRNA upstream 232596 4531789 ~ 4546466 (-) True ndfip2
XM_043240711.1 mRNA upstream 270641 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 270641 4569834 ~ 4574420 (-) True mnx2b
XM_043240393.1 mRNA upstream 297887 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 297887 4597080 ~ 4618626 (-) False fn1b
TU1152 other downstream 284023 4007840 ~ 4014287 (-) True G782
TU999 other downstream 1608846 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2693326 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 3168673 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 3670492 627700 ~ 627818 (-) True LOC122353666
XR_006252050.1 other upstream 1478378 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 1546883 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 1812270 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1968470 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 2158858 6458051 ~ 6468254 (-) False gaa2

Expression Profile