RNA id: TU1197


Basic Information

Item Value
RNA id TU1197
length 563
RNA type TUCP
GC content 0.44
exon number 1
gene id G824
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4356698 ~ 4357260 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgggactactccatatgagaccgcttcaacattggctacacgatcgagtcccgaggtgggcgtggcaaagtggcactcaccgggttcaaataacaccggcctgccgccaaaccttcaccccgtggtcagacctctcgttccttcgggccggagtgcccctggagcaggtctccaggtatgctgtggtttcacggatgcctccaccaccggctgaggggccacgtacaacgggcatgcagtgtcaggggtttggacgggccctcaactgcaatggcacatcaactgcctaaagttgctggcagtacatctcgtcctaggcagtctcaagaactgcctttgaggccagcatgtactagtccgcacagacaacatactgaccgttgcgtacatcaaccaacaaggtggtctacgctcccgtcgtatgtcgcaactagcccaccacctcctcctcctatggagtcggaagttctgaggtcgcttctcgccattcacattccaggagtgtgcaaccaggcagccgacgagctgtcgcgagctgcaccacccggagaatggagactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185 lncRNA upstream 57500 4294053 ~ 4299198 (+) True G815
TU1187 lncRNA upstream 57500 4294053 ~ 4299198 (+) False G815
TU1188 lncRNA upstream 57500 4294053 ~ 4299198 (+) False G815
XR_006251103.1 lncRNA upstream 135410 4219242 ~ 4221288 (+) True LOC122346159
XR_006251095.1 lncRNA upstream 138098 4209409 ~ 4218600 (+) True LOC122346127
TU1231 lncRNA downstream 144981 4502241 ~ 4502477 (+) True G856
TU1232 lncRNA downstream 146272 4503532 ~ 4503821 (+) True G857
TU1227 lncRNA downstream 183730 4540990 ~ 4542948 (+) True G852
TU1218 lncRNA downstream 218884 4576144 ~ 4599814 (+) True G843
TU1222 lncRNA downstream 251271 4608531 ~ 4609874 (+) True G847
XM_043236152.1 mRNA upstream 124195 4221283 ~ 4232503 (+) True LOC122342374
XM_043249780.1 mRNA upstream 345328 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 538702 3804599 ~ 3817996 (+) True slitrk6
XM_043246568.1 mRNA upstream 1235878 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 1235878 2941770 ~ 3120820 (+) False LOC122350229
XM_043240733.1 mRNA downstream 137934 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 191192 4548452 ~ 4554686 (+) True tuba8l2
XM_043240746.1 mRNA downstream 198245 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA downstream 198347 4555607 ~ 4561710 (+) True stk16
XM_043240557.1 mRNA downstream 232771 4590031 ~ 4597077 (+) True atic
TU1118 other upstream 657605 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1015822 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1614486 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 1760396 2594931 ~ 2596302 (+) True G482
TU696 other upstream 1829454 2524525 ~ 2527244 (+) True G474
TU1199 other downstream 747 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 580923 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 609926 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1522200 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1700144 6057404 ~ 6087655 (+) True G1183

Expression Profile