RNA id: TU1289


Basic Information

Item Value
RNA id TU1289
length 1683
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G888
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4551569 ~ 4553272 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATATTTACCAATGACAGTTGGCTCAAGGTCTACAAAGATGGCACGTGGCACGTATTTGCCAGCTCCAGTCTCACTGAAGAAGGTAGTGAAGGAGTCATCATGGCCGCCCACTGGTTTGTGGCTGGGCATCTGGCCGTCGGGCTGGATACCGTGTTCTAGACAGTACAGCTCCCAGCAGGTGTTCCCCATCTGGACGCCGGCCTGGCCGACGTGGACAGAGATGCACTCACGCTGTGGAGAGGAAACTGATTATTAGTAACCCTGTTTGCATGGCATTGCTTAACATATTAGGTGACCGTAATCTCCACAGTGTTCCTCCTACAACTACCCAgctagcatttatttttttctaagaatGTTCCCATTACAGTTGATGTCAAAGGTTTACATACCCCTTTCAGaatctgcaaaatgttaattattttaccaaaataagtaATACAAAATGCCTgttattgttcatttagtactgacctgaataagatatttcacataaaagatCTTTAGTATTGTTTAGGACAAACAAGGGACTTATGAACTAGTGAAACATCTTATTCAGGTCAGTactaaataatcaataatatgcTCTCCTTTTGGTAAATAATAGGGGTATATAAACCTTTGCCCTCATCTGTAagttataaaaaacattattgtgatcattttaacatccaaaatgtaccttttttatattttaaaatgtttttcttggtGGTGCAAATCCTTTTATGGATTATGGAAAGTTAATTTTGAACAAACAGCACATAAAACAACGTTCTATGAATAATGAAagatatatgaaaataatgattttgtgCTAAAATTTTACAAGCAATATTACAGACCAGAACTAAGATGCCTAACCAGAACTATGAATACTAAAAGAATATTCATAACAGAATCTTGCCAGAATATTTTGAGAACATTTCCAGTTACCCCTTATACAACATTTAGTGGGTCAAGTCGTAATTAAACCAAAAATTTCAAacaagcatgcaaTCAAATagcctaaataaatattaaaacaacatatcCGTATTTTAACTGCATATAACAATGTAACAAATTCAAAACAAGTCTCTTTCGTTTTGCCCACCAGGGGGCAGAGGCAAacaaaaagctgttattttcaGTCAGCGGTTGGTCATCAGTAACAGATGACTGACATCTGCAGCTGACAGGACagagaaaaggtgttggttgaatCTCTCAAAGCCCTCAGACATGTTTGTCGTCAGGGTTTGCGCTTATCTAGATGACAACCCTTAGATAACAAAGTCCATGCAAGCCTTGAATTCATATTAGGGCACGTTAAACACCTCTGTTTGTTTGGAAAGGGAGTTTCCTGGGAAGCCTGTATAATGTGACGGTTGCCACATATGGCAGGAGGCTTACTACTAACCCTCATAgccattattttcttttcacacGTAAATAAGAAACCTTCCACAATCAACCGCTTTCCTTGCTCGTCACACACTCCCTTGCAAGTCTGAAGAAGCATGAAAAGGCTTGAGGTGTCGACAACAGCCCCGACAGGTTTATATCAGACGAGAGAGCGAGCTACACCCTAATGTGGAATTTGTAGCACGTATACTAAAAGGGAGTTGAGTGAGTGTTCAAAATGAACGGAGGGAAAGGGAAAATGAAGAATATGCGAAGAGAAAATGgaaaattacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285 lncRNA downstream 40184 4510794 ~ 4511385 (-) True G885
TU1283 lncRNA downstream 45010 4506278 ~ 4506559 (-) True G883
TU1280 lncRNA downstream 50781 4500557 ~ 4500788 (-) True G880
XR_006251102.1 lncRNA downstream 97389 4446059 ~ 4454180 (-) True LOC122346152
TU1173 lncRNA downstream 513599 4037738 ~ 4037970 (-) True G803
TU1292 lncRNA upstream 3097 4556369 ~ 4557498 (-) True G889
XR_006251101.1 lncRNA upstream 65974 4619246 ~ 4623921 (-) True LOC122346147
TU1304 lncRNA upstream 67068 4620340 ~ 4620866 (-) True G899
TU1385 lncRNA upstream 194218 4747490 ~ 4748885 (-) True G959
XR_006251107.1 lncRNA upstream 307729 4861001 ~ 4862965 (-) True LOC122346181
XM_043240772.1 mRNA downstream 5103 4531789 ~ 4546466 (-) True ndfip2
XM_043251462.1 mRNA downstream 850324 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA downstream 850324 3695165 ~ 3701245 (-) True LOC122353624
XM_043251495.1 mRNA downstream 1266783 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 1266789 3136508 ~ 3284780 (-) True gpc5a
XM_043240711.1 mRNA upstream 16562 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 16562 4569834 ~ 4574420 (-) True mnx2b
XM_043240393.1 mRNA upstream 43808 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 43808 4597080 ~ 4618626 (-) False fn1b
XM_043240460.1 mRNA upstream 120417 4673689 ~ 4739459 (-) False nrp2a
TU1193 other downstream 252376 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 537282 4007840 ~ 4014287 (-) True G782
TU999 other downstream 1862105 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2946585 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 3421932 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 1224299 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 1292804 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 1558191 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1714391 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 1904779 6458051 ~ 6468254 (-) False gaa2

Expression Profile