RNA id: TU1368


Basic Information

Item Value
RNA id TU1368
length 493
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G948
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4977422 ~ 4977914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGAGCCTAAGCGTTTATGTACATTTAAGTGACATGAATACAGGAAAGGCGAGCGTTTTATGGAAATCCCCAATTAATTCAGCTCTGAACAGACTTTGTTCATACTTTGTTTTGTACTTAATTTAGCCTTAggttgtaattattttataatagtgCTTGAAATAGTTTACCCAAATGAAATTTTGCTGAAAGTGTATTCgtcctcaggccatccaagatgctagatgagtttgtttcttaatgtgaacagatttggagaaatgtagaaatcgttacttgctcaccaattgatcctctgcggtgaatgggtgccatgaGAATAAAAGAGTCCAAACAATTgttaaaagcatcacaataatccgcACCACACCAGTACATAAATTACGTATGTTTTGTGAAGTGATCTGCATTTTGGTCAGTAAATTATCATcagattaaaatatttgcatgacTCCTGTTCtgttaaaaagcaaataaagctTCATTTTATT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1377 lncRNA upstream 32588 4938219 ~ 4944834 (+) False prkag3a
XR_006251100.1 lncRNA upstream 58627 4896796 ~ 4918795 (+) True LOC122346140
TU1369 lncRNA upstream 59058 4918028 ~ 4918364 (+) False LOC122346140
XR_006251098.1 lncRNA upstream 62895 4896796 ~ 4914527 (+) False LOC122346140
TU1364 lncRNA upstream 63000 4896504 ~ 4914422 (+) False LOC122346140
TU1469 lncRNA downstream 1211 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 1211 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 1239 4979153 ~ 4996767 (+) False hecw2b
TU1485 lncRNA downstream 60806 5038720 ~ 5101322 (+) True G1016
XR_006251106.1 lncRNA downstream 149576 5127490 ~ 5138854 (+) True LOC122346173
XM_043240480.1 mRNA upstream 159 4967186 ~ 4977263 (+) True gtf3c3
XM_043240488.1 mRNA upstream 159 4967186 ~ 4977263 (+) False gtf3c3
XM_043240506.1 mRNA upstream 159 4967224 ~ 4977263 (+) False gtf3c3
XM_043240496.1 mRNA upstream 159 4967316 ~ 4977263 (+) False gtf3c3
XM_043240514.1 mRNA upstream 159 4968847 ~ 4977263 (+) False gtf3c3
XM_043240418.1 mRNA downstream 1218 4979132 ~ 5025914 (+) True hecw2b
XM_043240764.1 mRNA downstream 167994 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240779.1 mRNA downstream 171114 5149028 ~ 5156356 (+) True ube2f
XM_043240427.1 mRNA downstream 180065 5157979 ~ 5294440 (+) True erbb4a
XM_043247655.1 mRNA downstream 462151 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XR_006251062.1 other upstream 576 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 32581 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 619126 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 620162 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1278329 3636707 ~ 3699093 (+) True G749
TU1696 other downstream 901546 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1079490 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1307944 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1555588 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1733721 6711635 ~ 6845548 (+) True G1447

Expression Profile