RNA id: XR_006251076.1


Basic Information

Item Value
RNA id XR_006251076.1
length 1768
RNA type transcript
GC content 0.46
exon number 13
gene id prkag3a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4938181 ~ 4944841 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACACAGGCCACGCGCTATATTTGGAACAAGCTGCGCGCGCTCCCTCGTGCCTGCGCTCTCGCGGTCCGTCAGTGTCAAACGAGACACCTTTACGCCGCTCTTACCCAGACTCTCACAGCAATATCCTAAAATAGCGGGTCTTCTCTTCGCCGTGTCGTCGCTTTGTCTGTCTCCCGCCTTACTGCGCTTGGAGGGAGCGTCGCGTCTTAAATAGCCGACCTCGGTTGATCCTAATATAGCGGGGGATCCACGAGCATGCGCGAGGAGCGAGGACGCGCGGAGCGCGGAGGAGCTGGACTGTAGTGCACACGCACAAATGGACGCTGGCACTCAGGGCGAATGCCATGAGGACTGTATAATGAACAGCATAGACCATGATCCGAATGCGGAAGCTTATATGGACTTTATGAAGAAACACTGCTGTTATGATGCAATTCCCACCAGCTGCAAACTAGTCATTTTTGACACCACCCTGCAGGTGAAGAAGGCCTTCTTTGCTTTGGTTGCGAATGGCCTGAGAGCGGCCCCTTTATGGGACAACAAGCTGCAGAGGTTTGTGGGTATGCTGACAATCACAGATTTCATTAATATTCTTCATCGGTATTACAGGTCACCCATGGTTCAGATCTATGAATTGGAGGAACACAAGATTGAGACATGGAGAGGTGATTCATTTCAAAACGTCTATCTGCAATATCACGATCAGTGTCTCATCAGCATCACGCCGGATGCCAGCCTCTTTGATGCTGTCTACTCTTTACTGAAACACAAAATCCACAGGCTTCCGGTCATCGACCCCGAGTCTGGAAATGTCCTTCACATACTGACCCATAAGAGAATCCTCAAGTTCCTTCATATATTTGGAGCCTCGGTGCCAAAGCCACGCTTCTTGAAGAAGCAGATTAAAGACGCAGGAATAGGAACGTTCTCAGACGTGGCGACGGTCTCCCAGACAGCTACTGTGTACGATGCTCTATCTGTGTTTGTTGAGCGACGTGTCTCTGCTCTCCCAGTGGTGGACGACGACGgcaAGGTGGTTGCCCTGTATTCCAGATTTGACGTGATTAATCTTGCGGCGCAGAAAACCTACAATAACCTGAGCATGAGCATGCAGGAGGCCGTGCGCAGGAGACGCTGTTATGTGGAAGGAGTCATTAAGTGTTACCCTGACGAGACTTTAGAGACTGTTATTGACAGAATAGTCAAGGCAGAGGTTCATAGGCTGGTGCTTGTGGACAGGGAAGACGTGGTTCGGGGAATAATCTCTCTCTCAGACCTGCTGCAGGCCGTAGTTTTATCTCCAGCAGGTATTGATGCTCTGTTTTCCTAACCTGAGAGGATATGCTTCCCCTGTTACCTCTTCTAACCAGCACTAGTGTCCAGgtttttaaaagataaagtaAGACCGCAATCAAGAATGAAGAAaggaactcttttttttttttacattataaattcaTGTTGTAACACACGTTCAGTTTGAATGGCGTAAATGCATAACATGTTAAGCGACTAATTTCTCATTTAACTGAGAGATTGTTTATGATAAATGAGTACTGACAAAGGAAACtgatgctttttgttttcatggaCGAGTGAGCACATGGGCTTGGATTCTGATCAAATTGATCATGTAGTTTGCCTTTTTGTGCTATGTTGTGAAATGCATTGTCGGattatcatgttttgttttctaataaaCAATTCCTTGTGCTCTTTCCTTgcctcaaaaaataaataaccttatacaaaagtgaaaaaagca

Function

GO:

id name namespace
GO:0030554 adenyl nucleotide binding molecular_function

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251100.1 lncRNA upstream 19388 4896796 ~ 4918795 (+) True LOC122346140
TU1369 lncRNA upstream 19819 4918028 ~ 4918364 (+) False LOC122346140
XR_006251098.1 lncRNA upstream 23656 4896796 ~ 4914527 (+) False LOC122346140
TU1364 lncRNA upstream 23761 4896504 ~ 4914422 (+) False LOC122346140
XR_006251104.1 lncRNA upstream 310265 4624047 ~ 4627918 (+) True LOC122346166
TU1368 lncRNA downstream 32581 4977422 ~ 4977914 (+) True G948
TU1469 lncRNA downstream 34284 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 34284 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 34312 4979153 ~ 4996767 (+) False hecw2b
TU1485 lncRNA downstream 93879 5038720 ~ 5101322 (+) True G1016
XM_043240606.1 mRNA upstream 504 4932455 ~ 4937679 (+) True cnppd1
XM_043240532.1 mRNA upstream 6205 4922527 ~ 4931978 (+) True abcb6a
XM_043240631.1 mRNA upstream 273673 4659870 ~ 4664510 (+) True LOC122346006
XM_043240644.1 mRNA upstream 280291 4652632 ~ 4657892 (+) True LOC122346016
XM_043240618.1 mRNA upstream 288816 4644934 ~ 4649367 (+) True LOC122346000
XM_043240572.1 mRNA downstream 998 4945839 ~ 4955043 (+) True retreg2
XM_043240580.1 mRNA downstream 1001 4945842 ~ 4955043 (+) False retreg2
XM_043240543.1 mRNA downstream 15483 4960324 ~ 4966920 (+) True fastkd2
XM_043240480.1 mRNA downstream 22345 4967186 ~ 4977263 (+) True gtf3c3
XM_043240488.1 mRNA downstream 22345 4967186 ~ 4977263 (+) False gtf3c3
TU1199 other upstream 579887 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 580923 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1239090 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1597307 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 2195971 2742079 ~ 2742212 (+) True LOC122353699
XR_006251062.1 other downstream 22345 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 934619 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1112563 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1341017 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1588661 6533502 ~ 6536957 (+) True G1414

Expression Profile