RNA id: XM_043235838.1


Basic Information

Item Value
RNA id XM_043235838.1
length 2642
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122342053
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 738137 ~ 748364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtttgaaaataaaaatgctaaactaGTTGAGTATCAGGAATCATATGAGCTGAGTTACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaacccctcacactTGAAAGAACTGGATCTGAGCCGTAATAAACCAGGAGACTCGGgtgtgaagctgctctctgctCTACTGGAGGATCCACACTGTAAACTGGAGAAACTACAGCTGTGGGACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaattcctcacacctgagagaactggatcTGAGCTGTAATAAACCAGGAGAcacaggagtgaagctgctctctgctCTAGTGGAGGATCCACACTGTAAACTTAAGAAACTTTGGCTGTGTAACTGCAATATTGGAGAAGAAGGCTGTGCTGCTCTGAtttcagctctgagttcaaactcctcacacctgagagaactggatcTGAGCCTTAATAAACCAGGAGACTCAAGAGTAAAGCTGCGCTCTGCTCTACTGGAGGTTTCACACAGGGGAGAGCCTACAGAAGTGAATCCTGGGCTGTTCCTGGACTCACCTACTGACAGTCCAGTCGTCAATCCTGCTTTTCCCACATtgagaGAAATTAACATTGACAGTATTCAGGCCCCAGAGCCCAGAACCAGAGATGAGTTCCTGCAGTATGCTTGTGATTTGACCCTGGATCCGAACACGGCCCATCGGCGTCTGGTCTTGTCTGACGAAGACACGGCGGCCACCCTTCAGCAGACCTCTCAGCCGTACCCAGACGTCCCTCAGCGCTTCGACGGCTGGACGCAGGTGCTCTGTCTGCAGCCCCTCTCCTCCGACCGCTGCTACTGGGAGGTGGAGTGGAGGGGGCGTGGTTCCTCTCTGGGTGTAGTCAGCGGGTCCATGTCCCGCAAAGGGGCGGATTCGGGGGCGGGGCTCGGGTATAACGGCCAATCGTGGAGCTTGGAGCTGTCAGACATGTGCTGCGCAGCCATGCACGCCAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGAGTCGGGGTGTTTCTGGACAGGACCGCAGGGACTCTGACTTTCTATAGCGTGGATGATGAGTTGGTTCCTCTCCACACTTTTCAAGGGCTGTTCCCTCCATCGCTGTACGCCGCATTCGGGGTGGGCTGTGGGGTCGGCGTGGGGCTGGATTTTGCCATGGGACAGTTCAGCTCCGCGTCAGACAGCATTAAAATCTGTCCTTTGTGATCTCACAAAAAACATGCAGGTCATATTTCATTccgaaatcaaaatgaaaagaatcaaGGCTATTGGAAAGATCAAAATTATCTTTCATAAAGATTCAGTACTTCTCCCCTCCaaatttatattactttaacaCCTCTAGTAACTTGTacaattgtctttttttcatttctgcaaTACAACCATGGTAATCATTTTGTctagaccttttttttttaatctgccaaaaaaatgattatattataaaaaataaatgtacctaaaaatatgaaattacaccgtagataaaaaatattcttgtgccaaaatttagcattttacttTCATGGCTTATAGCTcacttaaatatttcatagtaATAACAATGATATTCatacttgacatgttaaaactTGTTGCTTTAATTCTAaagatgttttgatttttattgcaaaatgtaatttatttttctcttctaGACTCTTCACatgaaataattattcatgttaAGCAAAATAACTTGTGCATGAAGGGAAATTATTACTTTGTCATTATACTATAAAAATTTTGCAAACTTatggaaaaatgaaatgacaagaACATTGAATTTGatggttttattataaaaaaacaagataatCATACTAATACATGGTTCTGACAGCTAAGCACAGGAAAACACACTAAGGCCGTGGTTACTATGTCAACAGCACAAAAGAAATCACCTGGTGCTTGATGTCACAACTTGTGGCATCGTCTTCAAgcattgacctttgacctcaatGGCAGCAGAGGGCCTGATGACATCAACAGCAGGATGTAAATAAGGACACTTTGATGCAGAAATCAAATCATGCGTTTAATACCACACACTTCAGCTGGGATTAGAGATAAAGCTAGTGATGTACAGAAGCAGCAAGCATGCTGGTATTATTCTGAAGGAGGTGGTAATGCGATTCACTTTACCAAGTTTCGATTGTATTCTTGGCATAGCTGACAAAAGCTTATTAAAATGGCATTCCTGTAACAGTTTCTGGACCAAACTCATGGTTTTCCCTGTGCTGTCATCATGTCATTTACTAGAAAGCACAAAAGGTCAGTTTACCACAAAAACGAACACGTTTACGTACGGTTTAGCTTATAAAACGACAATTCAGGCAAGAAAGACAAATAATTTTGGTTTAAACCCAAAAAGGTCTTTGAAACTTGAGTCCCTTCTCAAactcgacaaaaaaaaaaacatgaaatatattaaaatctcaTTCCTAGCTGAATGGTTAGTAAATAATATTCGCTATCTCTCAGGTTAAGTGTATTAAGATAATCTAGTCTTACCTTACTGTTAGATAACACGCGTAACGCCTAGTTACTAAAAAACACAATTCTAG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141 lncRNA downstream 14101 723745 ~ 724036 (-) True G99
TU111 lncRNA downstream 289497 448328 ~ 448640 (-) True G73
TU110 lncRNA downstream 290255 447508 ~ 447882 (-) True G72
TU108 lncRNA downstream 295928 441879 ~ 442209 (-) True G70
TU104 lncRNA downstream 315728 422132 ~ 422409 (-) True G66
TU177 lncRNA upstream 144260 890244 ~ 890587 (-) True G125
TU328 lncRNA upstream 227762 973746 ~ 973969 (-) True G231
TU339 lncRNA upstream 330204 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA upstream 420524 1166508 ~ 1212143 (-) False mbnl2
XR_006251226.1 lncRNA upstream 510205 1256189 ~ 1263203 (-) True LOC122347488
XM_043249769.1 mRNA downstream 304459 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA downstream 304459 422900 ~ 433678 (-) True lztfl1
XM_043241388.1 mRNA downstream 330051 404682 ~ 408086 (-) True ccr9b
XM_043247627.1 mRNA downstream 376534 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 532578 193211 ~ 205559 (-) True prpf4bb
XM_043235840.1 mRNA upstream 20242 766226 ~ 826226 (-) True LOC122342059
XM_043235714.1 mRNA upstream 304762 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA upstream 304762 1050746 ~ 1116426 (-) False farp1
XM_043239696.1 mRNA upstream 371857 1117841 ~ 1137065 (-) True kpnb3
XM_043242829.1 mRNA upstream 402688 1148672 ~ 1164935 (-) True rap2ab
XR_006252043.1 other downstream 110319 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 299009 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 302012 435808 ~ 436125 (-) True G67
TU47 other downstream 551052 186420 ~ 187085 (-) True G20
XR_006252053.1 other upstream 383515 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 848774 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1942781 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 3261856 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3552326 4298310 ~ 4299193 (-) True G820

Expression Profile