RNA id: TU1623


Basic Information

Item Value
RNA id TU1623
length 3757
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G1117
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5579526 ~ 5607918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttgctagtgcatgctttaaaatattcacttttGACTTTAATGGtgcattattaaatgctaataattaacataaaacaaagaaaaatacaggttttacaatgtaatttgttttattgcttccTGGCAATTAATGTTAGCCCACGGaagcttattgtaaagtgtgCAACCATTAAAGATGACAGAAAGTCGCCTGAGGTTTATATTAAGGCTTTTAAGTGGGGACCTTACTACACATGCAACAGATTCTTTATATTGATATCCAGCTGTATTCATTTATGAACATATTGATGTGTTGCTGTACGTTCCCTTATACAACTTACCAGCATATACAGCTCCATACATACTCCATCCAGCGTTGGTATCACGCATATAAACGCATCAgcgtttttatgtttatttttgaccTGCAAATGTATTATTGGGACCTGCAAATGATGTTTCTCATGATTTTCTCACATCTAGCGTATTATCAGTTTTAGCATGCAAAAGAACAACCCCGTGTACTTTTGGAAAAAAGTTTATTGTGAAATGACTGTGTGAAAATCGGGATGGGGGAAATCGGCAGCCTGGCCACAGCAATGTCATGTGCCTTTAACACACAGCTAGAGGTGCTGTTGTAACCCTGGATGGGTGGAGTAAGAAGAAACCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCGCTGTGGACGGGCGCCCCGGGCGGAACAAGAAGGCAAGGAGGGTCAACTGCATGAAAGGACAATGtaacttccaaaaaaaaaaaaaaaaatgggcaagaaaacaaataaaggggaaaaaactgaATGGTTTAGAAGTGACATCCCATAGTCCTTTTTATTGATTGGTCTTCAAAACAGAATGGATGTCCTGACACCATGGGGTCTGCAGATATAGTTCAGCCTTCTTCACCACTCTCTCAGCGGATGGACTCTTACACGGACATGATGTGCTTGACGAAAGCTGTAAGTGGACACTGCCGTTCTCATCCTCCTGTCCCTGCATGAGAGAGTCGATCTCGGGCTCGGTCATCTTCACTCACCCAGTGTTGAGAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCTTTGTCGAAGACGCGCAGACCCTCAACGTAGTCATCAACGGTACCCTTCTGGATGGCGTCAACGGTCTTCAGCATGGGCAGGAAAGCTTCAAAGTCAAGTCTTTTGTTGGCCATATCTGTGTGCATACAGTTCCGCATACACATCACAAATCAGTGAGGGGCTGTAAAGCATTTATAATTATGCCCATtcctatttaataaaaatgatatatctTACCGTCAGCAGATGGGTCACCCAGGATTTTCTTCACATCCTTGTTGGTGGGGTTCTGTCCCAGGGCACGCATGATGTCAGCAACCTGGTTGAAGGCAACCTTGCTGTCACCAACTCTGTCGAAGAGACCAAAAGCCTCTTTGAAGTCTGTAACAGAAGGATAACAGAATGTTATCTGGAAGCAGATTTTAAGGGAGGATCATAATGTCATAATCTCAACTAATGTAGGCaagcataaaaaagaaatttatcTCACAACATAGcatcagacaaaaataaattatatattatatttaaattttttattgtattaaatacttttaaattttattttattttattttattttattttattttattttattttaggggCATCATTGCTTTTTTCAAATTAGGTAAATCAAGGAATCTTGTTTTTTTACCAGTGCCTCTCCCACATCACTCCTTTGCCAACTGTACATGCAGCAGAGGAGGAAGGAAGCCAATTTAAAAAGAGCTTAGCAACTGCATTTCCGTGGGCTGTGAGGGAGACCAAGTTGAAAGCGATCCgctaaaagaaaaatagcatCCTATGACTTCTGTGCTCCAGCAGCTGTGCACGAAGGTGGCACTTAATGCGTGACTTGACAGGCGATACCCTCAGCCTTTGCCATACATGGTTACAGTGCTTTACGACTGACACAAGTCAAATACAAGAATGCTGACAGCAATGTAACCTACACCTACAACCAACCGCATTCTTTCTGTACCTAAATAAGCAGCACCTTGCTGTGAACTGACCCTGAGGTTGGGTACTTATGAATTCTTTCTGTAGACAAATATAAAgatcattaacattttaactacTACATCAGAACACGGTACAGCAATTAATTCACTCGACACATGCACTGCATCAAAAAAACTGTACTCAATTCACCAGTCaactaaaacaaatatgtaCTAAAATACATCGTCTTTATGGTCTGCAGTCAAGGTCAGACATTAATCGGTtaaccaaaatataaacaaaacaatatatatgaaatataataaattatgtgaTATTATTTGTCATTCATAAACAAactaacattattaataatacttattattacaaatgatatataaaaaattattctccaatacaaatattttttaacctatttttcatccatttatacaaatgtatttatatattatatattatatatataagcctccaatgttattattttagacatttaggATACATTTCAACTTCATTTTGAgttatactttttgttttattaggtcTGGTGCTatgttgtgggttttttttttctacatcaAGTTCAAATGACTTTTGATGCAACGGCCATACTTTTTTCGTACGTAAAAATTTAAGGAAGCAACCAAACTGAAGTTTACAGAGAAAGAATTGTCCTTCATCAGTATGCGTTATACACACGCAACATCCCCATTACATTGGTAACAATAAGTCATAAAATCATAATGAGCTTGGATGTGTGAAGACTCACCCTCAATCTGGTCAGCAGAGAATTCTCCAGCCTGCCAGAAAGACAAGAATGGATCAGTCCCACTGGCAAACCTGACAACATCTCACAACACACACTACAGTCTGAAATaaggaattattttaaaagacagTAGGTAACATAAGCCCTTTTCGGACACGAGCAAAGCAACAGATTGGAAAGAGCGCATATATCCAGCAGGAGAACAAACCAGCTGCATGATTTTCTCTTTAACACTGATATACAGACTGTGCTTCTTTATACGACACCGCTGTGTCTTGCCCCGCCAAAGTCAATTTGAAAATCGCAGATAGGTGTCCTACTTCATTTGAGGGGGGCTTATTGCCAGTTTCGAGCCAGACGGACAAGAACAAGGTACGATAAGATAGCAAGAGTAATCCAAGTACACACCATGATGGAGTTTTGGGTGCAGGAGCGGAGTGGCAGAAGTCAAGAAGCCGGAGTCCCAGGAGAGTGGTCCTGAGCCATGGAGCAGCTCCTTCTTATTTATGCTATGCTAATGATGTCACGGGGCGGACCTTACGACTCAGAGGAACTTCTTTAACTTTCTTAGGTCAAGCTGGAAGGAAGGCTGCTGCTTTCTCCAATGTGCATGTGCGGCGGTATTTTTAGACTGTGCTCCAGGCTGCTCGTAAGACCTCCCGGCTTCGGTCAGCACTTTAATTTGATGTATTGTGTCTTTATTTGCATCCTTTctgaacgttttttttattctcagtcAGGGATGATGGGCCGTAAATCCTGATGTCACCTGTTGTGCCGACACAACATCTCAGGAAGGCTTTTGATTACAGTGTCGATATTTATAACTTGCATATGGTGGACTCGGCCACTTATGGTTATATGGGAAGATGGAAAAAAACAGTCCTTAAAGCTTATTTTTCACGGCATGGAGGCGTTCACATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1634 lncRNA downstream 36336 5561377 ~ 5566978 (-) True G1124
TU1620 lncRNA downstream 42459 5560618 ~ 5560855 (-) True G1116
TU1619 lncRNA downstream 45972 5556880 ~ 5557342 (-) True G1115
TU1618 lncRNA downstream 47564 5555490 ~ 5555750 (-) True G1114
TU1499 lncRNA downstream 451472 5150493 ~ 5151842 (-) True G1028
TU1658 lncRNA upstream 169180 5777098 ~ 5778154 (-) True G1146
TU1667 lncRNA upstream 181749 5789667 ~ 5789919 (-) True G1151
TU1797 lncRNA upstream 362472 5970390 ~ 5974062 (-) True G1240
TU1806 lncRNA upstream 412638 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 423978 6031896 ~ 6033999 (-) True G1248
XM_043240720.1 mRNA downstream 527703 5038724 ~ 5075611 (-) True klf7a
XM_043240805.1 mRNA downstream 643104 4956119 ~ 4960210 (-) True mdh1b
XM_043240448.1 mRNA downstream 706414 4765299 ~ 4896900 (-) False pard3ba
XM_043240440.1 mRNA downstream 706414 4765299 ~ 4896900 (-) True pard3ba
XM_043240468.1 mRNA downstream 863854 4677795 ~ 4739460 (-) True nrp2a
XM_043241868.1 mRNA upstream 3990 5611908 ~ 5616115 (-) True mxa
XM_043236157.1 mRNA upstream 17792 5625710 ~ 5629067 (-) True LOC122342384
XM_043242075.1 mRNA upstream 38228 5646146 ~ 5655085 (-) True efnb2b
XM_043242159.1 mRNA upstream 48719 5656637 ~ 5661762 (-) True arglu1b
XM_043241616.1 mRNA upstream 138552 5746470 ~ 5766103 (-) False radil
TU1193 other downstream 1304121 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1589027 4007840 ~ 4014287 (-) True G782
TU999 other downstream 2913850 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 3998330 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 4473677 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 169653 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 238158 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 503545 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 659745 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 850133 6458051 ~ 6468254 (-) False gaa2

Expression Profile