RNA id: TU1696



Basic Information


Item Value
RNA id TU1696
length 348
RNA type TUCP
GC content 0.35
exon number 3
gene id G1168
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5879460 ~ 5881134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGAACCTGAAGATGTCGGCCTGAAGGATACCattcagATTCGCTCACTGTGCAGTCTGCAGATGTTGAGTTTGTCGGTGGGTCAGGCTCAGTGCGATGACACACGGGTGCAGTTTGATGACACATGCTGGCAGCGGCACGCCCCCTCTCTTCGGCCTCTTGGATTGGCTGTGCAGTTGGTCCTCTGTGACCCTGCAGTCGCCACCCGCATACTCCGCCTCTCGGACCACCTGACCCATGCCGCGCTGGTGCGCACTCGACCCCCATGTCAGCCGGTCCGCCCACCCTGGGGCCTCTGCCATCTACCGAGGATTCTGGGCTTTTCCACCTCCGCAAAGGAGCCTTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1687 lncRNA upstream 17582 5832309 ~ 5861878 (+) True G1161
TU1689 lncRNA upstream 38447 5833095 ~ 5841013 (+) True G1162
TU1672 lncRNA upstream 80609 5797393 ~ 5798851 (+) True G1154
TU1581 lncRNA upstream 89884 5737887 ~ 5789576 (+) False G1091
TU1582 lncRNA upstream 89884 5737887 ~ 5789576 (+) False G1091
TU1716 lncRNA downstream 176270 6057404 ~ 6087655 (+) False G1183
TU1718 lncRNA downstream 176270 6057404 ~ 6087655 (+) False G1183
TU1737 lncRNA downstream 194564 6075698 ~ 6077286 (+) True G1195
TU1745 lncRNA downstream 208375 6089509 ~ 6089855 (+) True G1199
TU1746 lncRNA downstream 209039 6090173 ~ 6090453 (+) True G1200
XM_043241855.1 mRNA upstream 19302 5837113 ~ 5860158 (+) True slc5a10
XM_043242102.1 mRNA upstream 96599 5779697 ~ 5782861 (+) True LOC122347080
XM_043242110.1 mRNA upstream 96601 5779697 ~ 5782859 (+) False LOC122347080
XM_043242135.1 mRNA upstream 207142 5668397 ~ 5672318 (+) True en1b
XM_043242145.1 mRNA upstream 207142 5668400 ~ 5672318 (+) False en1b
XM_043241548.1 mRNA downstream 13459 5894593 ~ 5973200 (+) False cacna1hb
XM_043241541.1 mRNA downstream 13460 5894594 ~ 5973200 (+) True cacna1hb
XM_043241533.1 mRNA downstream 13460 5894594 ~ 5973200 (+) False cacna1hb
XM_043236243.1 mRNA downstream 103304 5984438 ~ 6019955 (+) True myo15ab
XM_043242062.1 mRNA downstream 140599 6021733 ~ 6027122 (+) True alkbh5
XR_006251062.1 other upstream 902614 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 934619 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 1521164 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 1522200 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 2180367 3636707 ~ 3699093 (+) True G749
TU1714 other downstream 176270 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 404724 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 652368 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 830501 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 898484 6779618 ~ 6782141 (+) False rgs11

Expression Profile