RNA id: TU1745


Basic Information

Item Value
RNA id TU1745
length 347
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1199
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6089509 ~ 6089855 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGCCCAACCTAACTAAACATGTGCCTAGGCATGCAACTGCATTAATATTGAGTTTTGACTATCCATGTACCGGTTTCCACTGTGAACTCAACAGTGTAATCTTAATATTATAGCTCAATGAGCCATAAAGAATAGATAAGCTTAGTCACAGAGGTGAATGAGTCATTGTTACAGTCTATTGCTACATCATTTTTCGAGTGCTTCTCATTCCTAATATATGGAATAGGTACAGCGTTCAATCTCTGCAGGGTGTGTGAGTATCAGCTTGACTTTTAGGGTGTGAGAGTTGTAACATATGCGCATGTTTATGATGCCCTTTCATCTGTTTTGAAATCCGCATTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716 lncRNA upstream 1854 6057404 ~ 6087655 (+) False G1183
TU1718 lncRNA upstream 1854 6057404 ~ 6087655 (+) False G1183
TU1737 lncRNA upstream 12223 6075698 ~ 6077286 (+) True G1195
TU1687 lncRNA upstream 227631 5832309 ~ 5861878 (+) True G1161
TU1689 lncRNA upstream 248496 5833095 ~ 5841013 (+) True G1162
TU1746 lncRNA downstream 318 6090173 ~ 6090453 (+) True G1200
TU1747 lncRNA downstream 990 6090845 ~ 6091157 (+) True G1201
TU1752 lncRNA downstream 25109 6114964 ~ 6115281 (+) True G1206
TU1866 lncRNA downstream 130069 6219924 ~ 6221396 (+) True G1287
TU1874 lncRNA downstream 137437 6227292 ~ 6277288 (+) True G1292
XM_043241952.1 mRNA upstream 18873 6062142 ~ 6070636 (+) True slc29a4b
XM_043241960.1 mRNA upstream 18873 6062142 ~ 6070636 (+) False slc29a4b
XM_043241663.1 mRNA upstream 49665 6035257 ~ 6039844 (+) True smcr8b
XM_043242011.1 mRNA upstream 55711 6028082 ~ 6033798 (+) True mief2
XM_043241988.1 mRNA downstream 4494 6094349 ~ 6099830 (+) True fscn1b
XM_043242171.1 mRNA downstream 18006 6107861 ~ 6113525 (+) True zgc:77849
XM_043241721.1 mRNA downstream 136543 6226398 ~ 6231182 (+) True tlr2
XM_043241842.1 mRNA downstream 143181 6233036 ~ 6260748 (+) True prkcba
XM_043241833.1 mRNA downstream 143225 6233080 ~ 6253697 (+) False prkcba
TU1714 other upstream 1854 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 208375 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1112663 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1144668 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 1731213 4358007 ~ 4358296 (+) True G826
TU1931 other downstream 196003 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 443647 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 621780 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 689763 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 756645 6846500 ~ 6858568 (+) False LOC122351737

Expression Profile