RNA id: TU1847


Basic Information

Item Value
RNA id TU1847
length 1412
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1270
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6111463 ~ 6113523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGCTTGATTTCTTTAATGCAAGAATCATTATTGTACATTAACAATTCAATGGTCTctgcacagctttttttttacaatatgtacCACAAGTCTATGTCAGCACCTACAGgtatttacattacataatgTTACATTGGAGACAAAGGTGCTGGGGAAAAGAGCGACAGAAGAGGatgagcgaaaaaaaaagatggatgtTCAGGAAGAATGAAGGGAAATTACTGAAGAAAAACGAGAGTGATTGAGAGATGTGCATGACAGCGGACGTATGGCTATCACAGCACTTGTGCCTGCTGCTCGAGCAGAATTAagagaaagcaaaaaagaaaaagaaaaatcatgaaTAACATtgtcaataatattaaaataaaacttttgttgcTTTTCAAAGCCGCAGCGTGGTAACTGAGAGCTGGGGCAGTGACAGGTGCTGGAGGAAGAGGCAGgtaccacacacactcacaaacacactctaaCACAAAACTCATCAGTcgttcactcacacacatcaaGTACTTGTACACACACGCAATCAAACAGACATTGCTCATTATGTTGCGAACATGCACAcgaaaatgttttcttgttcCTGCGTTCGATCGCATCTCAGTTCAGCCATAACgcaacctcacacacacacacacatacacacaatcaACTCACGCAGCAATATAGTGAATGAGGGTTGTGTGTTTGTCGACAGGATCCTATGGAAGGGCACTTAGGCCTCTGCACTGAACACCGTCTCCCACCGATCACCTCAACTGGGCTCTGTAGACCAATCAGAGAATGTGCTGGGCTGTGGTGAGCACTGTTATTGGCTGCTTTTATTTCCTGGTCTGAATAAAGATGGGAGGATGACTGAGGAGTGGCATTTTATTCACGTATTACGCAGTTGTTGTCGTCGTCGTCTTTTTCTTAAGAGCTCAGATCATCCTATTGCGTTTGTGAGTGGGCGAGTCTGTTATGACATCATTGCACTGGGCGGAGCTTCGTTTCCGAGTTCCGTTGTCGAGGTGGAGTGCCATCTCCTCGGCAATGAAAGTGTTGAGGTCCACGTCGTGGAGACCGTTTCGACGGCGACTGGGGGCGGAGCTGGCACTCAGGTGTGTGGGTGAACCTGGGGCTCCGGAGCGCATACTGATACTCGCCATGGCTCCGCTTAGACCTTCAACACACAGATGAACTTGTCTCCGAGGACGTGGGTCGGCTTGGCGACACCATTGCAAGTCTTGGCGGAGCCCTGGAGCTACGTGGCGGTGGGGCTTTACCACAGAGGAAGCTGATAAGATCCTCACGCCGAATAGTCCGCCTCCTTTTCTTCACCCATGCTAGGACATCTTTGTTTCGTCTCTGATGACCGATCTGAATACCCAACTCATAACTCCTCTGATGGGCATCAACACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1836 lncRNA downstream 22060 6089023 ~ 6089403 (-) True G1263
TU1825 lncRNA downstream 43849 6066311 ~ 6067614 (-) True G1257
TU1822 lncRNA downstream 48278 6062356 ~ 6063185 (-) True G1254
TU1809 lncRNA downstream 77464 6031896 ~ 6033999 (-) True G1248
TU1806 lncRNA downstream 90532 6020556 ~ 6020931 (-) True G1246
TU1861 lncRNA upstream 100118 6213641 ~ 6214547 (-) True G1282
TU1867 lncRNA upstream 104721 6218244 ~ 6218589 (-) True G1288
TU1868 lncRNA upstream 110745 6224268 ~ 6225890 (-) False socs1b
TU1869 lncRNA upstream 110745 6224268 ~ 6225890 (-) False socs1b
TU2016 lncRNA upstream 213500 6327023 ~ 6328061 (-) False gng13a
XM_043241882.1 mRNA downstream 4483 6099976 ~ 6106980 (-) True abcg2b
XM_043242049.1 mRNA downstream 23701 6084199 ~ 6087762 (-) True actb1
XM_043241809.1 mRNA downstream 28285 6078416 ~ 6083178 (-) True fbxl18
XM_043242088.1 mRNA downstream 33190 6074411 ~ 6078273 (-) True LOC122347076
XM_043242194.1 mRNA downstream 37521 6071930 ~ 6073942 (-) True LOC122347124
XM_043241594.1 mRNA upstream 25100 6138623 ~ 6205146 (-) True grin2ab
XM_043242322.1 mRNA upstream 107081 6220604 ~ 6226114 (-) False socs1b
XM_043242305.1 mRNA upstream 107081 6220604 ~ 6226114 (-) True socs1b
XM_043242313.1 mRNA upstream 107081 6220604 ~ 6225920 (-) False socs1b
XM_043242331.1 mRNA upstream 107081 6220604 ~ 6222741 (-) False socs1b
XR_006251180.1 other downstream 258219 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 333806 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1812270 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 2097176 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3421999 2688765 ~ 2689464 (-) True G654
XR_006251170.1 other upstream 154140 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 344528 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 426005 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 958066 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 1048800 7162323 ~ 7169421 (-) False G1642

Expression Profile