RNA id: TU19


Basic Information

Item Value
RNA id TU19
length 741
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G5
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 47787 ~ 48527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatcaagatgtggtttcttaatgagaggtttaactacagccagtttaaaggttttgggaacataacctaatgacaatgatgaattaataatgttcaaaataggatctataacttctggaagcagatcttttaatagtttagatggaacagggtctaacatacatgttgctggtttagatgatttaacaagtttgtacaagtcttcttctcctataatagagaaagagtgtaatttttccttaggggatctaaagctcattatctgatgtgaaactgtagttgacggctgcatatttacaattttatctctgatggtatcaatcttagaagtaaagaaattcataaactcattgcagctatactcttggggcatattagcacctgttgatgctttattttttgttaatttagtcactgtactaaataaataccgggggttgtgtttgttttcttctaaaagggatgaaaaataatcagatcttgctatttttaatgcttttctgtatgacagcatactctcccgccaggcaatacgaaatacttctaatttggtttttctccacctgcgctccattttccgggctgctctctttagggtgcgtgtgttgtcattataccatggagtcagattgttttcttttatcttttttaagtgcaaaggagcaactgtatctaaagtgctagaaaaaagagagtgcatagtttcagttacatcatcaagtttttgcatcgtattggatg

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20 lncRNA upstream 3640 52167 ~ 52588 (-) True G6
TU45 lncRNA upstream 117570 166097 ~ 166327 (-) True G18
TU46 lncRNA upstream 129149 177676 ~ 178201 (-) True G19
TU80 lncRNA upstream 170052 218579 ~ 221074 (-) True G50
TU81 lncRNA upstream 170402 218929 ~ 221328 (-) True G51
XM_043238439.1 mRNA upstream 144684 193211 ~ 205559 (-) True prpf4bb
XM_043247627.1 mRNA upstream 162196 210723 ~ 361603 (-) True gli3
XM_043241388.1 mRNA upstream 356155 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 374373 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 374373 422900 ~ 433678 (-) True lztfl1
TU47 other upstream 137893 186420 ~ 187085 (-) True G20
TU105 other upstream 387281 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 390527 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 579173 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 1080972 1129499 ~ 1129637 (-) True LOC122353706

Expression Profile