RNA id: TU20


Basic Information

Item Value
RNA id TU20
length 339
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G6
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 52167 ~ 52588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtcctgcagctgctggagtggttagactttcccagacgctacaccttgatcctggagcgtcccgttccttgccaagatctggacactttctgcaagcagaacggacgcctggaggagagtctggccaagaaagtgctgctgcagctggtcacggcgctgaaacactgcgagagccgcggagtcctgcaccgggacgtcaaaccggagaacctgctgatctccacagagtcacacgacatcaagctgctggacttcggctgtggagatctgctgaaagactcggcctacagacactttgcaggcactcttcagtacgcccctcctgagtggttttggcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19 lncRNA downstream 3640 47787 ~ 48527 (-) True G5
TU45 lncRNA upstream 113509 166097 ~ 166327 (-) True G18
TU46 lncRNA upstream 125088 177676 ~ 178201 (-) True G19
TU80 lncRNA upstream 165991 218579 ~ 221074 (-) True G50
TU81 lncRNA upstream 166341 218929 ~ 221328 (-) True G51
TU86 lncRNA upstream 340711 393299 ~ 393852 (-) True G56
XM_043238439.1 mRNA upstream 140623 193211 ~ 205559 (-) True prpf4bb
XM_043247627.1 mRNA upstream 158135 210723 ~ 361603 (-) True gli3
XM_043241388.1 mRNA upstream 352094 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 370312 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 370312 422900 ~ 433678 (-) True lztfl1
TU47 other upstream 133832 186420 ~ 187085 (-) True G20
TU105 other upstream 383220 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 386466 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 575112 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 1076911 1129499 ~ 1129637 (-) True LOC122353706

Expression Profile