RNA id: XM_043242750.1


Basic Information

Item Value
RNA id XM_043242750.1
length 5820
RNA type mRNA
GC content 0.45
exon number 9
gene id mbnl2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1076188 ~ 1231647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGTCAGAGCAGCTTGTTGCACGACCAGCTTTTTGGTAAACTAACTTGAGTTCGGCGTTAAAACCTAAACCAGTTGCCTGACGAGTCGCGCTTGGCGTGGACCGACGAGAATGTTCGCTTCGGTTAAAGAGCAAGCCTTAATTCCCCTGACCTAACGAGTCGTTTGCCGCAGTTTCCATCGAGCTCTTTTGCCGTCTGCGTGATTTGTGGTCAAGAAACAGCACCGCAGCGGCAGGTCATGGTAACCAGatccCGGACTGAAGAAAGTGCCTTCTCTGACGACGTTCCTACTTGAAGCTGCTCGCCTCTCCCATCCTACACTGTAAACAACGCTGGCTTGGCCTCCGAAAATATCTCAATTCCTCAGACTTGCCAAAGCACAAGGAAACTACACGCTTTTTCCGTTCACGGACGCTATTAGATACCGTTCCAAGGAGAGCCGTTGCCTTCAGACATTGCCATCCACAGCAGTCGAGCTCAAGACCATTTGGAGACCTGGAGCATGTTCTTATTGTTGCGGCGTTGTTGTGCACCTGGGACTAAATGACTGATGAACGAGACTGACAGCTTCACTGATAGCCACCATCTCCCAGCGCGACAGCCAGCAGGGGTCTGAATGTGACGTCTCTATTTAAAGGGCCTCGCCGACGAACCTCAAGACCAGTCACGAAACAGCACAGAAATACGTtcgcagacttttttttttaaacccgaAGCAACAATCCCGCAAACCGACACCATAGAGCCTGCAGGTTCTCAAACAGCTATGGCTTTAAACATCGCGTCGATACGAGACACGAAGTGGCTGACGCTCGAGGTGTGCCGGCAGTTTCAGAGAGGGACGTGCTCGCGCAGCGACGAGGAATGCAAATTCGCTCACCCGCCCAAGAGCTGCCAGGTGGAGAACGGACGGGTGATCGCTTGCTTCGACTCGCTGAAGGGGCGGTGTACGAGAGAAAACTGTAAGTATCTTCACCCACCGGCGCATCTGAAGACGCAGCTGGAAATCAACGGACGCAACAACCTCATCCAGCAGAAGACGGCAGCGGCGATGCTGGCGCAGCAGATGCAGTTCATGATCCCTGGCACCACCATGCAACCAGTGCCTACATTTCCCGTCAGCCAAAGTCTGGGCTCAAACCCTGGACTGAGTTACGCTCCGTATCTGACTCCCATGAGCCACGGCATGGGCCTGGTCCCCACAGAGATGCTCCCCAGCACCCCTGTCATTGTCCCCGGGAGCCCTCCGGTCAGCGTGCCCAGCTCGTCCTCCACACAGAAGCTCCTGCGCACGGACAAACTCGAGGTGTGTCGCGAGTTTCAGCGAGGCAACTGCGCTCGCGGCGAGACCGACTGCCGCTTCGCCCATCCCAGCGACAGCCCGATGATCGACACGAGCGACAACACGGTCACCGTCTGCATGGACTACATCAAGAGCCGCTGCTCGCGCGAGAAGTGCAAGTACTTCCACCCTCCGGCGCACCTGCAGGCCAAGATCAAAGCCGCCCAGCACCAGGCCAACCAGACCGCCGTCGCAGCGCAGGCCGCCGCCGCAGCCATGACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCATCTGTAGATCTGGCGTTTCCACACGGAGTCCTGCAGCCCCTACCAAAGAGACCGGCGCTAGAAAAGAGTAACGGGGCCAGCACGCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAGCGCACAGCTCCAGCAGCCCACCGCTGCGTTCTTTCCCACAGCAACAACTCCTGCCACAAGTGTCCCCTACGCAACAACAGCACCAGCCAATCAGATCATCTTGAAGTAAACCGCCGAAGAGGAACAACGGGGTGTCAGGAAGCTGCTTTGAGAAACCCAAAAAGATCCCCGTGTAAATACGTCCTGCCCTCCTCCCCTTTAGAGCTACAGCAACCTGCATGCTAAAGAGTAACACACAGAACACAGGAACACACACCGTATACCCGTCACGACTCGAGCGCTTTCTAACTTAAAAAACGAGActagaaaatatatatgaatatatataaatatatatataaatatatatatgttaatgtaCAGCACGTTTCATAGAGGCATAAGTGAGATTTCATCCGAAACGATCGGTCACCCGTCAGataatgtgtatttttctcCCAtggttgttttaaataaaatgcacaacgAGTGAGcgacccccacacacacacacacacacacacacacacacacacacacacggtttgCACTGTCGGAAATAGTGCTTAATAATAAGTGCTTGATTGTCTTGAACGGGAGGACGTCTCCTGCAGAGTATGTCTTAAACGTCCCCATGCACCCTCTAGAAAGGGGAAAGAGGGATTTCGATTCTTGTTTTAATAGCGAATGTCGCACGGCGGACACACAGAAGATTGTCTACTGGTCAAAAAGCGCCTCCCTTCTTGGACTTCGGAAAGATATTATTCCTAACTCTTCATCCCCACTGGCCAAAGAAAGGTTTACAAGGACACCAAGCGCATCCCGGAGTGCGAATGTGGCAAACCGCGTGCCATGCAACCACGTTTCCGTCTGCGTCCCTCTCTGCTAAAGGACTGTGTTTTActccttcctttctttctttttttttgtttcgtgtttgtttttaaatggacGCTGAATGATTTCGATGCGTCTGTGGAAACACCGGCCATCAGGGAGTCGACTCTGGCTTCTATCCCGTGCCAAGGGCTTACATTAAACTGGAGAGCTGCTGTAAAACAAACTCACACACGAGACGGACTTCTTCTCCAGATTGTCCGGGGGCCCGTCCGCAGTCCCACTCACACGGTGCCCGGCGAgcggagagagaaaaaaaacgaggACGACGAGGGGGAAACCGTTGCAGTAGACGATCTTTGTGAATGGGGGGCTCTCGCCGAGCTCTCGCCGATAATCctgttttatttgataaacaGTAGAagtgcctgaaaaaaaaaaaaaaaaaacgacaaaaacaaaaaaaaatctattttacacAGCAAGCATCTTGAGAAGATGACTTTATGCGGGGGTCGGGGGGGTTCTCAAAACGTTCGAAAGCGAAGCTCCCGAAATGATTTTGGCCAGACGAgcgaggggggaaaaaaacggaaaaaaaaacgcatttcaTGCACATCACGGTCTGTTTCATTACACAATATCGATGTCGCTCGAATCGGAGCGTAGGAGGAATGTTCGTTTCGTCGTACGATGTTGGCTTTTATGCTTTCTCGGAGTAGTTGACGTTGGAGATGTAAGGAACTTAAGGAGCTCAATGTCTGTAACGCGCGTGATGTTTGGAGTTTGGTGAACGAATGTCGTTGCGGTGTGTTCTTAACCAGTTATGTTGTCGGCTGCCTGTTAAAGGGACggctcacccaaaaaatgaacattagcactgcatcacttgctcggcagtgaatgggtgccgtcggagcACCCATCCACAGCGCTCCTGTCCGTCAGTCAACGTCTGGAGAAGATAAAAGCAGCGGTTTGGTGTTGAAAACGTCTTAATGATGCTTCTGTTTTTTACGAACGCACAGCTTTTGCCGTCTAAAGGCGTCACCTGATTGGCTGGAGCGCTGTGGGTGTTTTCGTCGGCTGctcggactctcattctgacggcacccattcactgcagtgctgcacgtctccagatctgatgaagaatcAAAGTCGGATGGCCTTAGGTTGAGGAAATGTGCCGCAAACGTCATTTTTTCCcggtgaactgtttctttagcAAACGCGTCTGTCGTTTTCTTACTATAACGAATCATCGTTTAGTTTTAATTTGGATGGTGTTTTACCTGGAATAGCGCACACGGCCTTGTTTTTCTCCCCGACGTGTGATGGGTGAAGCGTGTGTATCTGCATGCCTGCGCGAGTGTGTTAGCGATCCAATCAGAACCATCATGTATTTTCATGGTGCTCGATTAACACAGACAATCCACAAAGAGACGTTTGGTTTCGCAGGAATACGGCACTGGTcctagcattttcatttttaaattcatgtcaaaaaaaaaaattttttttttttttcttctttttttccgcTGTTGTCGCAAAAGTTacagttttaatgtaatttttgacGTGGaaagtgatttaaatatattttattgtcattctgTTCACTCTTTATTTTTCCGTTTTGTTAAATACTAGAACACAGAACAATGGTGTaacctattttaaaaatgaatgtaatttattaagcCGGGCTTAGCTACACGCAGCGGTCCTCGGCCAATCAGGAGCCGCTTCTAGATCTCTCTCTCGTTCGGGACGCCGCGTCGTAGCGCAAGCGAGGCTATAGAATTGCTTgtgttatgtaaaaatgtttattgtataGGTAatgttttaccaaaaaaaaaaaaaaaaaactaaaatgtaaaaaaaaaaaaaaaaaaaaaaaagaactccGTAGTATGATAgctatttcataataatattaataatattaagttGTTGCTGTGGCAACCTAAAAAGTTGCAAATACTAaattttggtatttttgtaaatgatgtaATTGTtaagttgattttatttttattttatttttttcgttcttttcttttcttttttttcctagaGCACTGTAAAACGTTAGATTGTAAAGCAGATATTGGAAACATTTCCTATTTTATGTCGAGATTATATTACCAGGAGATTTTTTCGGTAGCATTTAACGGCCTCTTTATCGGTGTAACATTTTAAGATAGTAGTAAATACTCACAGATACAATAGTGTGACGTAACTTAAGAAACGACTCTAGTGTTGGGTTTAACCCCGTGCCCCGTCCCCTTCCCCGTTTTAGATTGAAAAAGGATCTCAAGTACTTGTGAGGAtcgatttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagacacacacacacatattatttatGAAAGCTGTCCTGGTTTGTTCAACAACTTAAACGAATTAACGATTGCACTTTGATTTCTTGTAACCGTAGGATGTTCATTTCAGAAAACCGATGCACAATGAATATGGTATGGCAACACGGATCAACGACggttgttttattgctttagtTAAACCAGAGAACTAAATATTCTGTAAGCATCTTGCATGGTATTTTATGTCAAATTTAAGAAGTTATTTTCAATTTAACctgagaaaataataataataaaaaagaaaaaaaaaaaaaaaaaaaaggaaatatattgAATGTTTCTATCTAcactataaaagaaaaaaaaacctgcacaTGTGATGAAGGTAACGGTTGTCCTTAATTTGGGATTTCTTACGCCCCGAAAGAAATGTACAGAGTTTCGGGACAAAACAATTGTTGACTGATGGTGAAAAAGCACTTTGGAATCAGTTGATATACTGAGCAGACACAGCGTATCCAAACACTTTGCCTTACCTTTAGTCCATTGTTTAAGCTTTTGTGTTTCAGAGCTATTAATATGTACTAGGGTGTCAACAGGTCTACTGAACTTACTTCTCACCTCCATTTATATACCAATATATACTATACCTATAACTAATGTAAGagttttttatgattattattattatttccaagCATTGTCACTGAGAGGCCCAAAGGTTTGACGGTGTTGATGCTTTTCAATGCCCTTTCCTGTTTGCGATGAGATGCCGCTCTCAAGGGATTGTGGGTATTTACGCTGTGCTGCTTGACTACCATCTGTAATGCAGTATgcccatccacacacacacacacacacacacacatccacagagATAA

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0001654 eye development biological_process
GO:0009790 embryo development biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328 lncRNA downstream 192718 973746 ~ 973969 (-) True G231
TU177 lncRNA downstream 276100 890244 ~ 890587 (-) True G125
TU158 lncRNA downstream 418323 741070 ~ 748364 (-) False LOC122342053
TU141 lncRNA downstream 442651 723745 ~ 724036 (-) True G99
TU111 lncRNA downstream 718047 448328 ~ 448640 (-) True G73
XR_006251226.1 lncRNA upstream 24543 1256189 ~ 1263203 (-) True LOC122347488
TU355 lncRNA upstream 51192 1282838 ~ 1284809 (-) True G244
TU361 lncRNA upstream 112652 1344298 ~ 1346789 (-) True G247
TU386 lncRNA upstream 209442 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 335392 1567038 ~ 1567532 (-) True G297
XM_043242829.1 mRNA downstream 1752 1148672 ~ 1164935 (-) True rap2ab
XM_043239696.1 mRNA downstream 29622 1117841 ~ 1137065 (-) True kpnb3
XM_043235714.1 mRNA downstream 50252 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA downstream 50261 1050746 ~ 1116426 (-) False farp1
XM_043235840.1 mRNA downstream 340461 766226 ~ 826226 (-) True LOC122342059
XM_043242641.1 mRNA upstream 33125 1264771 ~ 1269925 (-) True slc5a3a
XM_043246720.1 mRNA upstream 45854 1277500 ~ 1315538 (-) True ptgfrnb
XM_043248832.1 mRNA upstream 87144 1318790 ~ 1324793 (-) True si:ch211-132g1.1
XM_043248853.1 mRNA upstream 100037 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA upstream 100037 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XR_006252053.1 other downstream 37050 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 538869 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 727559 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 730562 435808 ~ 436125 (-) True G67
TU47 other downstream 979602 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 363112 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1457119 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2776194 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3066664 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4545925 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile