RNA id: TU361


Basic Information

Item Value
RNA id TU361
length 2395
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G247
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1344298 ~ 1346789 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTGCCAATATTTCTGAAATGGCAACTTTATTCAAACTTAATACACATTTCAGGATTTCATGGCCGTCAGACACTGcaattgtataatattaaaaaaattgattgagggatttactttacatttgcacaaaaaaaacaaacaataaaaacaatggcAAATGCATTTAGGCCGCATTCTTTCTAAATACACTGAAAGAATGTAGtgaataaattactaaataagtgaaataaatgtaacagcCACTGCTAAATACAAGATCTGTTAAAAGCCATCTTCATGACGCAAAGAGCAGAGGCAGTGTTCAGGAGTTCACATATTCAATTTCATTGTCACAGAGCAATATGATGAGCAAACAGTTTCCTCAATTCTATTTTAATCCCTATTTAAGCAACAGTTACCAGGCAAGTGTTTCTCTGCAGTTCCTTAAAATacgaaacacacagaaacaaacattCAGAACCACTTTGGGATAAAGctcacacattttttatatattcaaatacaggTCTGTGAATACAAAAAGgaaattatgcattttgcaAAGACCGCAAAGCGACATCTGCAGCCTATGGGAAAGACATTTCCCAAAAGCTCCTCGGGATCAATGTTATTAGTTACTGGTGCACTTTTAGATACTGGTGAATGAGGTTAGTAATATCCAGTCATAGACAATGTGATCCATCATAACCGGCATTAAAAGACATACATAAATGTTGcctgtattatataaaaaggaaaaaaataccaaccacaacaaaagaaaaaaaaaactgaaggtTACACTAGAAAAAGATTACATACCGCAGggataatatacaaaattaagAAGATACTGtacaaatcaaaaatgaaactaTGACAAGATCAGTGAAGTATGAATGAATCGAAACCGCACCCTTaaacgctaaaaaaaaaagaaatgagggAGTTTCTCATTTCTCATAAGAAGCTGAGgccctaaaatgtgtttttcatcgCAGAGACATGGCTTTATATTAGTTTAAAACACCGGAATGAAATACAGCATGCTACTCACGGTGAAAGAGAAATATGAGAATTACAGAATCGCTTTCATATCTGGGTGTTTCTGAAAACGAGACATTTGCACAAACTACAACGAATGAcctaaaaaaagacattttcctGATTTCCTTTTGAATAAAAAGATTGCAATGTTTCTCAGTAGCAAAGAGCAGGTTCACCCGCCAAGCGCAAACGCTTCAAACCTTTTACTTCTAATCACGCACTGTTTGCACTAAGTGCTACTTGTTTCTACTATCTACAAATTCATACATCTATCAGGATCTCTGATAGCAGAACAAAAGGCATGTGACAATGAGCATGCTACAAACTAAGTAGTCAAGTCTTATTCACATCCAGTCACAAACGGCCCCATCTAGACGCTGAGAATCAGTATAACTCCTGTCTCATGTCACCTAGCCGTCTTAAACACATTCAATTAGTTATTCTACATGTAGTATGGTGTGATGGCACGTTCGCCTCCCCAGTGTTGGTTTCACTAAATTGCATAATTAGGTACTACATTTGATTTGTAATTTAGTTCAAAGATAGTCTTATATAGTATGAATGAAATTTGGATATTATTCTTCTGCCATGTTGACACGGTCATGTGACCTACATGGGATGTGCATTTCTCACTGTTTTGTGGATAGTATGATACTGTTTGGAGGCTGCCGCTctcaaatgtgcattttgaagTATCTTACGATAAAACAAGCGATGAAAGCGGTCcaggtttaattaaaaatccatTCATTTGCTAAAAACACGTTGGTTTTTCATATAATGCACGGCGGAAATGCATTTCGCGAATTAATTTCTCCAAGCGCATCAAAAAAGTAATATGCTTTTGAGCAATGGGTCGGCAAATCCTGACTAAGCGCTCATTCCACAGCGTCTGAAATTACGCTTATTCTCAAAAGCCTGAGAAAAAGTAAGCATTTCTCCAATCCTTTGTCATGGATTTAGCCTAAATCTGGTCAAAATGCAATGCCGAGAATATGCtttgacagagaaaaaaaatagattgcTGAAAAAGTCACGAACGACACGTGTGGTCTGAAAATAACAGTGTGGACTATCAGATtggagaggggggaaaaaaatcaaataaaatcaccaATGTGAACACCAACAATTAAACTGAGGCCTGATTCATGAAGGATCACTTTTAAAACTAACCATATTTGGTTgagataataaataatgatttcaaTCGCGCAAAGCTCACGGCCCGTTTTTGAAAATCAGACTGTCATTGTAGAAGCAATTCAGTAAGCCAATAGAAAGAAAAATCCTCATTTTGTGTCTTTGTTGTGGTCTCTCCACCAAATTCTGCTGACTTGTTTCAGTGAAGCAGAGCTGTTATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355 lncRNA downstream 59489 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 81095 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 132155 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA downstream 132155 1166508 ~ 1212143 (-) False mbnl2
TU328 lncRNA downstream 370329 973746 ~ 973969 (-) True G231
TU386 lncRNA upstream 94299 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 220249 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 233954 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 237102 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 436406 1783195 ~ 1784512 (-) True G347
XM_043248853.1 mRNA downstream 10474 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA downstream 10475 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XM_043248832.1 mRNA downstream 19505 1318790 ~ 1324793 (-) True si:ch211-132g1.1
XM_043246720.1 mRNA downstream 28760 1277500 ~ 1315538 (-) True ptgfrnb
XM_043242641.1 mRNA downstream 74373 1264771 ~ 1269925 (-) True slc5a3a
XM_043247012.1 mRNA upstream 705 1347494 ~ 1353796 (-) True LOC122350472
XM_043247143.1 mRNA upstream 17753 1364542 ~ 1370987 (-) True LOC122350536
XM_043247230.1 mRNA upstream 17753 1364542 ~ 1370825 (-) False LOC122350536
XM_043247451.1 mRNA upstream 46140 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043247346.1 mRNA upstream 57789 1404578 ~ 1412946 (-) True LOC122350642
XR_006252053.1 other downstream 214661 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 716480 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 905170 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 908173 435808 ~ 436125 (-) True G67
TU47 other downstream 1157213 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 247969 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1341976 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2661051 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2951521 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4430782 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile