RNA id: TU386


Basic Information

Item Value
RNA id TU386
length 392
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G260
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1441088 ~ 1441512 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCATGTAACACGATACAGCACAGGAACCAGAAGAATTCATACagatagaaaaacatttttatttacaaacgtcagagataataaataaaaacggtGTATAAAAAGCAAGTCCGCGTCGTCGAGGCTTTGGCTTCAACATCTGCACCAGAAACACAGAGCCGCTCGTCCGTCTCGTTCTTCACCCGTTCTTCACCCGTTCTTCACGTCAGTCGTCCTTCTTGTTATCGATGAGCTCCTGCGTCTGTTGGGCGAGTTTCCTCTTCATCTCCATCTGCCGTTTCAGAGCCGCTTCTGCTTTCTTGCTCTGGTAGAGCTTCGTTCCCGCAAACGCCAGACACAGCAAGAGCGTCTTCAGAGCCAGGATGTAGAGCAACACCGGCACGTTATCCA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361 lncRNA downstream 94299 1344298 ~ 1346789 (-) True G247
TU355 lncRNA downstream 156279 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 177885 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 228945 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA downstream 228945 1166508 ~ 1212143 (-) False mbnl2
TU436 lncRNA upstream 125526 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 139231 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 142379 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 341683 1783195 ~ 1784512 (-) True G347
TU528 lncRNA upstream 425128 1866640 ~ 1867365 (-) True G358
XM_043247346.1 mRNA downstream 28142 1404578 ~ 1412946 (-) True LOC122350642
XM_043247451.1 mRNA downstream 38264 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043247143.1 mRNA downstream 70101 1364542 ~ 1370987 (-) True LOC122350536
XM_043247230.1 mRNA downstream 70263 1364542 ~ 1370825 (-) False LOC122350536
XM_043247012.1 mRNA downstream 87292 1347494 ~ 1353796 (-) True LOC122350472
XM_043246433.1 mRNA upstream 1279 1442791 ~ 1455071 (-) True rcan1b
XM_043246442.1 mRNA upstream 1279 1442791 ~ 1448514 (-) False rcan1b
XM_043235983.1 mRNA upstream 23925 1465437 ~ 1469101 (-) True urp2
XM_043237908.1 mRNA upstream 150557 1592069 ~ 1604984 (-) False LOC122343438
XM_043237922.1 mRNA upstream 153349 1594861 ~ 1604984 (-) True LOC122343438
XR_006252053.1 other downstream 311451 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 813270 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1001960 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1004963 435808 ~ 436125 (-) True G67
TU47 other downstream 1254003 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 153246 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1247253 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2566328 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2856798 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4336059 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU468182 True 600 lncRNA 0.40 2 CI01000299 4704124 ~ 4704801 (-)