RNA id: TU436


Basic Information

Item Value
RNA id TU436
length 443
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G297
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1567038 ~ 1567532 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTGTATTAAGAATTTGATAACCGgagcaatatttattatatgtcaAAAAGCAGAACTGTAGCgctgtagttttagtttttctttgagCTCTCCGGTGTCCGTGCAGCAGGCTGTGACTCACAGTGTATGGCGCTGCGGCTCGGGGAGATGGGTGTCGTGGGGTGAACCGCCGGGGTGGAGATGGGACCCAGGTAAGGGTAGGACTGCTCGTACGACCAGGACGGAGACGTCTGCATCTGCCGAGAGTCTGAAACCACACGGTCACATTCAATGCATGACATTTCACCGTCAAAACCAAGACGTACATACTACAAAATACAGAGATATTATCAATGGCtactgagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacactcacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386 lncRNA downstream 125526 1441088 ~ 1441512 (-) True G260
TU361 lncRNA downstream 220249 1344298 ~ 1346789 (-) True G247
TU355 lncRNA downstream 282229 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 303835 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 354895 1076188 ~ 1212143 (-) False mbnl2
TU451 lncRNA upstream 13211 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 16359 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 215663 1783195 ~ 1784512 (-) True G347
TU528 lncRNA upstream 299108 1866640 ~ 1867365 (-) True G358
TU548 lncRNA upstream 322444 1889976 ~ 1893190 (-) True G372
XM_043235983.1 mRNA downstream 97937 1465437 ~ 1469101 (-) True urp2
XM_043246433.1 mRNA downstream 111967 1442791 ~ 1455071 (-) True rcan1b
XM_043246442.1 mRNA downstream 118524 1442791 ~ 1448514 (-) False rcan1b
XM_043247346.1 mRNA downstream 154092 1404578 ~ 1412946 (-) True LOC122350642
XM_043247451.1 mRNA downstream 164214 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043237908.1 mRNA upstream 24537 1592069 ~ 1604984 (-) False LOC122343438
XM_043237922.1 mRNA upstream 27329 1594861 ~ 1604984 (-) True LOC122343438
XM_043237916.1 mRNA upstream 29679 1597211 ~ 1604984 (-) False LOC122343438
XM_043262113.1 mRNA upstream 38344 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043262747.1 mRNA upstream 38344 1605876 ~ 1612082 (-) False wu:fa56d06
XR_006252053.1 other downstream 437401 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 939220 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1127910 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1130913 435808 ~ 436125 (-) True G67
TU47 other downstream 1379953 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 27226 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1121233 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2440308 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2730778 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4210039 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile