RNA id: TU46


Basic Information

Item Value
RNA id TU46
length 526
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G19
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 177676 ~ 178201 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggccatcatcccatccacatACAGATAGAAGATGGGGGTAGACATGAcgggatgacagaaataaagaagtacagcattacatgaggagaggtgaggcgagaaaaaaaataagccaAACCCAGACTGTGCTCCTAAGGGACCACAGTGTGGTAACgggaaaaaaacacctcagcaataGAAGCACATAGTTTAGACACTTTTGACAACATGTAAGACAAGGTAAAAATCTGGGTTATTGGGATCCTCCACTGGCGAGCAGTCATCCTTCTCTGGCAGCCGTCGATGCAGCGCTTGATCCAGACCCGTCTGCCAGGCAGGCGGAAAGGTGGGGGTGAGGAGTGCGAGAGCGTCTTCACTGCCGTGATCTGCCGGGggagttgtttttccagcagtggCCTTGGCCGAGGCCAGTGCATGGTACAGggagtcaaaaccagataagaatggaatttgtttaggcttggTGCGAGTAGTCATAGACAATTTTTACCCGAACTACTCTATTGTCCATCCTGGTCCATTTTC

Function

GO: NA

KEGG:

id description
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45 lncRNA downstream 11349 166097 ~ 166327 (-) True G18
TU20 lncRNA downstream 125088 52167 ~ 52588 (-) True G6
TU19 lncRNA downstream 129149 47787 ~ 48527 (-) True G5
TU80 lncRNA upstream 40378 218579 ~ 221074 (-) True G50
TU81 lncRNA upstream 40728 218929 ~ 221328 (-) True G51
TU86 lncRNA upstream 215098 393299 ~ 393852 (-) True G56
TU104 lncRNA upstream 243931 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 263678 441879 ~ 442209 (-) True G70
XM_043238439.1 mRNA upstream 15010 193211 ~ 205559 (-) True prpf4bb
XM_043247627.1 mRNA upstream 32522 210723 ~ 361603 (-) True gli3
XM_043241388.1 mRNA upstream 226481 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 244699 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 244699 422900 ~ 433678 (-) True lztfl1
TU47 other upstream 8219 186420 ~ 187085 (-) True G20
TU105 other upstream 257607 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 260853 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 449499 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 951298 1129499 ~ 1129637 (-) True LOC122353706

Expression Profile