RNA id: TU47


Basic Information

Item Value
RNA id TU47
length 666
RNA type TUCP
GC content 0.41
exon number 1
gene id G20
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 186420 ~ 187085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAtgtattgtgacgagtcggctgcccctcctctttattgtcaccatcaccccgtcctttattcgccgcccttcaccaggctcccgacgggagtgggtgtgttcgagaggaggggcgggtattgttcaggtctggcggcgtgtgacgaggcacacctgaagtgagttagcctcgttaccgtcgccgttaaataccgaacgcgcctctcctcgggggaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgcgatggacctcaccccgccgtccgagaagtgcgtcgtgggacccccgtagtccaggctgtgagcacacagctcatcccactctgccgccggagcaaagaagcgacggagacgccgcggaagaagccgccgcccctcgcgccccggaccagaaaaaggggagcgcgtgcgaccgccggactccgccccttacctggacccttccccccctggaacacggcctaaacctgcacgttacccggagcacgacgaggacaccagatcccccttttatttggacacttcccccttggacactttattttgtattattttgattttgttaataaaaaaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgttggctcctcccgtcacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46 lncRNA downstream 8219 177676 ~ 178201 (-) True G19
TU45 lncRNA downstream 20093 166097 ~ 166327 (-) True G18
TU20 lncRNA downstream 133832 52167 ~ 52588 (-) True G6
TU19 lncRNA downstream 137893 47787 ~ 48527 (-) True G5
TU80 lncRNA upstream 31494 218579 ~ 221074 (-) True G50
TU81 lncRNA upstream 31844 218929 ~ 221328 (-) True G51
TU86 lncRNA upstream 206214 393299 ~ 393852 (-) True G56
TU104 lncRNA upstream 235047 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 254794 441879 ~ 442209 (-) True G70
XM_043238439.1 mRNA upstream 6126 193211 ~ 205559 (-) True prpf4bb
XM_043247627.1 mRNA upstream 23638 210723 ~ 361603 (-) True gli3
XM_043241388.1 mRNA upstream 217597 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 235815 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 235815 422900 ~ 433678 (-) True lztfl1
TU105 other upstream 248723 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 251969 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 440615 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 942414 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1407673 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile