RNA id: TU528


Basic Information

Item Value
RNA id TU528
length 279
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G358
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1866640 ~ 1867365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTATTTGCTGGGGTATTGCTATGCGGGTGTTCTAGGTGTTTGCTAGGGAGTATAGTTACTGAAGTGTTTTgagtagttgctagggtgttgctatgtagtAGCTGGGGTGTTGTAGGTGTTCTAGTGCAGGTTAAGTTGCTAAATTGTTCAGCgtagttgctagggtattgTTATGTGGGTGTTCTAGGTGTTTGCTAGGGTGTACAGTTACTAAAGTCTTTTaagtagttgctagggtgttgctatgcagtagCTGGGGTGTTGTAGGTGTTCTAGGG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU515 lncRNA downstream 82128 1783195 ~ 1784512 (-) True G347
TU454 lncRNA downstream 281956 1583891 ~ 1584684 (-) True G304
TU451 lncRNA downstream 284553 1580743 ~ 1582087 (-) True G303
TU436 lncRNA downstream 299108 1567038 ~ 1567532 (-) True G297
TU386 lncRNA downstream 425128 1441088 ~ 1441512 (-) True G260
TU548 lncRNA upstream 22611 1889976 ~ 1893190 (-) True G372
TU560 lncRNA upstream 74586 1941951 ~ 1942933 (-) True G378
TU563 lncRNA upstream 79668 1947033 ~ 1947420 (-) True G380
XR_006251817.1 lncRNA upstream 124512 1991877 ~ 1997037 (-) True LOC122351936
XR_006251658.1 lncRNA upstream 145714 2013079 ~ 2017454 (-) True LOC122350950
XM_043262113.1 mRNA downstream 254558 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043262747.1 mRNA downstream 254558 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043263564.1 mRNA downstream 254563 1605876 ~ 1612077 (-) False wu:fa56d06
XM_043259232.1 mRNA downstream 254565 1605876 ~ 1612075 (-) False wu:fa56d06
XM_043261426.1 mRNA downstream 254565 1605876 ~ 1612075 (-) False wu:fa56d06
XM_043239674.1 mRNA upstream 94949 1962314 ~ 1968862 (-) False n6amt1
XM_043239665.1 mRNA upstream 94949 1962314 ~ 1968862 (-) True n6amt1
XM_043239683.1 mRNA upstream 94949 1962314 ~ 1967111 (-) False n6amt1
XM_043235994.1 mRNA upstream 284286 2151651 ~ 2155943 (-) True LOC122342174
XM_043247680.1 mRNA upstream 356724 2224089 ~ 2235491 (-) True jam2a
XR_006250784.1 other downstream 261656 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 737003 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1238822 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1427512 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1430515 435808 ~ 436125 (-) True G67
TU999 other upstream 821400 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2140475 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2430945 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3910206 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3978711 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile