RNA id: TU548


Basic Information

Item Value
RNA id TU548
length 3183
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G372
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1889976 ~ 1893190 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGCACCGTCTTATACTagtacacatttatttacagcggtaaattacagttttaacaGGTGTTCCAGTGGTAAGATCAGGACTCAGATGTTCTCCATCAACTAAAGACCTGCAACGAACACGGAAGAAAAAGAGCTTCAACGACCCAGAACATAAAAAGCAGAAGTCTTTTCTGTGAATGCATAGAGTATTAGAAGAGAAACTCGTCTGAATGAgactgaaacacaaaagagtCGCTGGATGAAACTCAATAACGAGGGAGAAGCAGCTGGAAACGGCTCGTaattaatgtaacatttgaTCTATTTTGTCATTTCTGGCTTAATGCAGTGCGGTACTTCACATACGTGGAGTTCTggagaacaacaacaacgacaacaaaaagACAGCAACAGATGTTTTCTATCCAGATGGTTTGTACGTCTTCgctgaaaaatgcaaaagtacAAATGAACGCAATCTTTTTTTGCAACTCGTGTGACTGGTTTCATTGACATCATACAGGCTTTACAAACACTTTACAAAACAGATCTGGTAGATAATGCCCTGCTGCTCCATTAATGACTCCACAGAAGAGACTCGGCCTGATCTGGAACTTCATTCCTAATGTTTTACAGGAACACTACATCACACGCCATGTATGTACAAACAGCTGTGAACCatagtaaaatatatcaaatataataagaaCTAAAGTGGCTCTCAGGTGGCAAATGTTGGCTTTTATCGACAACATCGACCAGAATCTCACGCTACGCAAATATACAGACGCGAATGACTGACATGTGCGCTtcgttacttgaaataaaaggaaaaaatacattaaatgaatctttgaatttaaatgttgccttgaatttcaaaaatggctaaaaataaaactaaattaaataatacatatgcTGTATAAGATGGTGCATTTTTAATACGCTTAAACGAAAGCGTGCAATAAAACGACAAAGacaagctaaaattaaaaatgtcattaaattaaaatatagattttatattacaaaGACAAACTGAATTAGCAATGCAGCTTTAGAAACTAAGCAACATAAATGCGTTTAAGTCAAAGCatcaaaaatactgaaataaaaaggcagaaattaaaataaacgaatgtcaaataaaaatataaaaattacataagtacataatagaattataaaaactaaatagaacTAAACTCGCTATATACCAATTAGCTATGCTGACttaattataaacacacaatttagtCAACGTTGCTAATTTTATATAGAGACAattaaaattgaacaaaatcacaaaatcacaaataaattagaaaatcacataataaattagaaaataatatacatgaaaatgtaaatgatatataaatgatacaaaacgagaaaaatacatattccAGCATAACTACTAATCATGATGGACTAACTGTTCGAAGATAATCCTCctgagaaaatgaatgaaactgcGTCCATGTTCACATCAGTTATCTGAATAACGCGCTCATAAAGCGTCCGTCAACCATTCGCATCTTTGTTCGTGTATTCACGTACTCATCCTCACGTACacccacacatgcacacattaaTCAACATAAATTCATAAGAGCATTTCATCTGGCATCATGGCAGTCGCGCAAATCCAAACTACAAAGTCACTTTACTACAAAGTTTTGCCAGGTTTCTTTTTCGAAGTGACCCCTGCGTTTAAAACTCATGACGACGAAATGGGAAACACGAACCGTTGAGGTCTTCAAGCTTCGGAATTGGACATACATAGAGACGCATCACCATGCCTGGAAAAATAGAAGAAATCCAATCCAtctggatctttttttttttccccatggaAAAGTCCTACCAAAACATTGAAAAAGccaaaaaccaaaaagtctCTAACACATTTAGATGAGAGGCCCAGAATCTGAAATCATCGAGACTATAGACACAACACAATGTCCCGCTGGGCAGAAAAAAATCGACTCGACATGCCTGGAAAGTAGAAGAAAGGTCTGGAAATTCATTTCTGAGATCCTCCATGGCCAAACCGAAACATCAAGACGCACACGCCAACCGAAAAGTAGCGCCGGAGTCATCGTGAATAGAAAGGACAGTAGATTTATCACAAAAAACGCAGTCCCTGTTTGcatttgaacatatttacaCACCCCTTTTACCCCTCTTTTATGATATCTTCTGCTTTCTACATTTGGTCTGAGTTTGTTCGGGCTGGGATGGACTCCGGGCTCCATTACGCTTTGCTGTCGTCCTGTTTTGTGTGGAGGCTGTTGTCCGTGTGGACCTTGATCTCGATCAAGTCCGGCTTTAGCACCTCCTTGCCGTTCTCCTCCTTCAGCGGGAGCTTCCTGCGGTCAGAATCAGTGGCTGTTAGTCACCATTCTGTCATCCAACATGCTTTCTGACACAAACGAGGGCCGAACGTCTGACAACAGAAGGACAGGACTTTGGAAAGGTCATGCATCTCGTTagcatgcaaatgttttacGACAAGCTGAAAACGCCAGTGGCGTCTGTACATCAGCTGATCAGCTGGTTGAGGCTAAAACGAACATTTTTCTGCACCTGTTGACGGCTGCTGAATTTTGAGCCATATATTTGTCCCTTCGCAGAGACTTTGATTAACAGttgatctgaccaatcatagcACACAATCTACCACCATTTTGTCTGACAACTATACAAGATAGGAGAGTAGATTAAAGCCTGTGgacttaaaaaataacatgtttgcGTGGCTGAAATGAAGTCTTTTGAAATAGAGTGttatgttcattcatgtttattttgtgctataacTAATAGTAAAATACAATCGGTTCAAGTGTATAGCAACCTGTCACGAaacattaaagagccacaaaattatatttattagagATGTAATGATATTATCGATCATCACATGTGGTGatagtttttaaaacatatttacacttCGTTTTTTAAACATGAGAGGTCATGTTCCTACTATTTATTGTCAGACATAGCAACAGTCACTAACGGGGGGCGGGTCTTTGCGAACGGCGAATTAACCAATCATGTCGTCCAACAAGCAATAATCAGGAAAGTAGATTAATGCTGGTGGGCgtgttcattcatatttattttgtgctttaagtaaataaattgttaGAATTACTTTCAGAATtcacaataaagacaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528 lncRNA downstream 22611 1866640 ~ 1867365 (-) True G358
TU515 lncRNA downstream 105464 1783195 ~ 1784512 (-) True G347
TU454 lncRNA downstream 305292 1583891 ~ 1584684 (-) True G304
TU451 lncRNA downstream 307889 1580743 ~ 1582087 (-) True G303
TU436 lncRNA downstream 322444 1567038 ~ 1567532 (-) True G297
TU560 lncRNA upstream 48761 1941951 ~ 1942933 (-) True G378
TU563 lncRNA upstream 53843 1947033 ~ 1947420 (-) True G380
XR_006251817.1 lncRNA upstream 98687 1991877 ~ 1997037 (-) True LOC122351936
XR_006251658.1 lncRNA upstream 119889 2013079 ~ 2017454 (-) True LOC122350950
TU593 lncRNA upstream 173347 2066537 ~ 2066858 (-) True G402
XM_043262113.1 mRNA downstream 277894 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043262747.1 mRNA downstream 277894 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043263564.1 mRNA downstream 277899 1605876 ~ 1612077 (-) False wu:fa56d06
XM_043259232.1 mRNA downstream 277901 1605876 ~ 1612075 (-) False wu:fa56d06
XM_043261426.1 mRNA downstream 277901 1605876 ~ 1612075 (-) False wu:fa56d06
XM_043239674.1 mRNA upstream 69124 1962314 ~ 1968862 (-) False n6amt1
XM_043239665.1 mRNA upstream 69124 1962314 ~ 1968862 (-) True n6amt1
XM_043239683.1 mRNA upstream 69124 1962314 ~ 1967111 (-) False n6amt1
XM_043235994.1 mRNA upstream 258461 2151651 ~ 2155943 (-) True LOC122342174
XM_043247680.1 mRNA upstream 330899 2224089 ~ 2235491 (-) True jam2a
XR_006250784.1 other downstream 284992 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 760339 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1262158 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1450848 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1453851 435808 ~ 436125 (-) True G67
TU999 other upstream 795575 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2114650 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2405120 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3884381 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3952886 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile